CV886648
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.509e-33 Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = -2 Query: 230 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDD 442 +DKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSTT+ ALTEPIDIYSEWIDECERVNN+EDD Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.196e-30 Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = -2 Query: 215 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAYEK 442 +DKLDT+FSCPFCNHG+SVEC IDMK+LIG+A C IC+ESFSTTITALTE IDIYSEWIDECERVN EDD E+ Sbjct: 16 MDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDDVVQEE 91
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae GN=ELF1 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.676e-16 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = -2 Query: 242 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 442 V KLDT F+C FCNH SV C +D KN IG C IC +SF T I +L++P+D+YS+W D E VN+ Sbjct: 16 VQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.853e-15 Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = -2 Query: 242 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 433 LDT F+CPFCNH E ++D + +G C +C E F T I L+EPID+YS+W+D CE+ NN Sbjct: 20 LDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQANN 83
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe GN=SPAC1B3.02c PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14 Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = -2 Query: 221 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE-------RVNNLEDDGAY 433 LDT F+C FCNH SV C +D ++ +G C IC +S ITAL+ PID+YS+WID C+ V+N+ D AY Sbjct: 19 LDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAVANQAKEVDNINDQEAY 96
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_MOUSE (Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14 Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -2 Query: 245 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 433 L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE N Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14 Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -2 Query: 245 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 433 L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE N Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14 Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -2 Query: 245 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 433 L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE N Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_DROME (Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13 Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = -2 Query: 245 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 442 ++ LD F+CPFCNH S E ++D + C +C E F T I L+EPID+Y++W+D CE N Sbjct: 17 IEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVDACETAN 82
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_MANSE (Transcription elongation factor 1 homolog OS=Manduca sexta PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13 Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = -2 Query: 245 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 442 ++ LD F+CPFCNH S E ++D C +C E F TT L+EPID+Y++W+D CE N Sbjct: 17 IEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVDACESAN 82 The following BLAST results are available for this feature:
BLAST of CV886648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV886648 ID=CV886648; Name=CV886648; organism=Citrus sinensis; type=EST; length=527bpback to top |