CX674457

Overview
NameCX674457
Unique NameCX674457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2)

HSP 1 Score: 397.897 bits (1021), Expect = 3.427e-110
Identity = 201/267 (75.28%), Postives = 232/267 (86.89%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRXSVRSKTL 801
            DLALQVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F   + F+PSAFGSL+T+RR  VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY+LPE+LE  +LICE+ +KP+YLVALL+S   EKCI+FTSSVE+T RLC LLN FG+ +IK KEYSG    S+RSK L
Sbjct:  105 DLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKEL 371          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 5.688e-89
Identity = 174/268 (64.93%), Postives = 208/268 (77.61%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR-FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRXSVRSKTL 801
            DLALQVK+VF AIAP VGLSVG AVGQSSIADE+S LI++ K       D E +  E Q+ VDILVATPGRLMDHI+ T+GF+LEHL YLVVDETDR+LREAYQ+WLPTV+QLTRS ++N  +SD +    +    L TIRR GVERGFK K +PRL K+VLSATLTQDP+KL+QL+L HPL L +G+ RY++P +L+SYKL+C+S LKPL L+ LLQ L  EKC+VFTSSVES+HRL TLL  F +L  K  EYS LQR S R KTL
Sbjct:  121 DLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSDQNHSWSDMNG--ETLLHPLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQHPLLLNSGKKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFEDLPFKFSEYSRLQRESTRRKTL 386          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DDX51_DICDI (Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum GN=ddx51 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.090e-31
Identity = 99/280 (35.36%), Postives = 149/280 (53.21%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE-NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP---------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICESKLKPLYLVALL-QSL--------GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYS 765
            DL +QV+  F +I     L V L++G      E   LIK         Y+         S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL  V+  T   ++ N+  +      ++ G ++   +       KD             +LVK++LSAT+T +P+K++ L L+ PLF TT +T   +Y +P  L+   +I     KPL L+ ++ +SL         ++K I FT SV+ THRL TLL   G+   L+   +EYS
Sbjct:   97 DLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHSYGEHALYE---------SLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFEK---SISLKDNNNQMNHLCWSEFKLVKLLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEYS 363          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.474e-28
Identity = 88/269 (32.71%), Postives = 129/269 (47.96%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--------------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 765
            +LA QV  VF     A  L V L  GQ S+A E   L+++                  +   DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++   +Q+WLP V+          F       P A   L+  +   V       P   L K++ SATLTQ+P KL QL LH P   +TG                +Y  P  L  + + C    KPL ++ L+  +G  + + FT+S E++HRL  L+  FG   + + E+S
Sbjct:  292 ELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK-------------TADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA-------FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFG--GVDVAEFS 536          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.474e-28
Identity = 92/277 (33.21%), Postives = 133/277 (48.01%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTT---------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRXSVRSKTL 801
            +LA QV +VF+A      L V +  GQ S A E + L    ++  G+ +          S  DI+VATPGRL+DHIN    F+L+HL +L++DE DR++   +Q+WL  V +   S      +  S F  +  G         +       P   L K++ SATLTQ+P KL  LDLH P LF +T          +  +  P+ L  Y + C    KPL ++  L  L     + FT+S E  HRL  L+  FG   +++ E+S       R KTL
Sbjct:  283 ELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----------SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAVYSTPGE--THTSVFRRTVPGP--------ITAASLSPPQIPLQKLLFSATLTQNPEKLQLLDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTNSREGAHRLYLLVKLFG--GVEVAEFSSKLSPGERQKTL 534          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.379e-26
Identity = 86/285 (30.18%), Postives = 130/285 (45.61%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT---------------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRXSVRSKTL 801
            +LA QV  VF        L V L  GQ S+A E   L+++                  +   DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++   +Q+WLP V+             A+ +     GS   ++R     +       P   L K++ SATLTQDP KL +L L+ P   +T                  +Y  P  L  + + C    KPL ++ L+  +   + + FT+S E++HRL  L   FG   + + E+S       R K L
Sbjct:  264 ELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK-------------TADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA------------AAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFG--GVSVAEFSSRYGPGQRKKIL 521          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DBP6_ASPNC (ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.435e-23
Identity = 91/261 (34.87%), Postives = 127/261 (48.66%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG-SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG----------------ETRYKLPERLESYKL-ICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLL 723
            +L  Q ++     A   GL V  AVG  +I DE  E +                +   +  VDIL+ TPGRL+DH+  T+GFTL++L +LV+DE DRLL E++Q W+  V  +T  D            P AFG S   +   G+    K+   PR  K+VLSAT+T+D  KL  L L +P  +  G                + ++ LP  LE + + + +   KPLYL+ LL S    E K +VFT S ES  RL  LL
Sbjct:  206 ELVKQAREACELCAAGSGLRVASAVGNVAIKDEQRESLP-------------GYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLEWLVIDEADRLLNESFQEWVDVV--MTSLDARK--------APDAFGFSGNFLSGLGLPIQSKE---PR--KVVLSATMTRDVTKLNSLRLANPKLVVIGSDAAATEDESGGVAPSDEQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSHIKLETKILVFTKSSESASRLARLL 438          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DDX51_DROME (Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila melanogaster GN=Dbp73D PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.692e-22
Identity = 86/293 (29.35%), Postives = 131/293 (44.71%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-------------------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRXSVRSKTL 801
            +LALQV  V + +     L V L   Q  + DE  +L+++ K              +  S  DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++   +Q WL  +    +   +     A T  P  +  L        +  F  +P+    K++ SATL+QDP KL  L L  P    T  T                         RY  P  L     + E +LKPL + AL++    ++ + FT+S +   RL  +L   F +   K+ E SG     VR++ L
Sbjct:  226 ELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK-------------GKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLL--AGTQAPLCYAEL--------QASFGKQPH----KLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERL 491          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DBP6_CANGA (ATP-dependent RNA helicase DBP6 OS=Candida glabrata GN=DBP6 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.076e-21
Identity = 74/218 (33.94%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   82 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 723
            S +A+  S +I   KLE       E+  + L++  DI + TPGRL+DH+  +   +L +L +LV+DE DRLL +++Q W+P V+   +SD  ++   +                              ++KMV SATLT +  KL  L L++P LF T     Y LP  L+ Y+L     +S  KPLYL+ LL+ L   K +VF  S ES+ +L  LL
Sbjct:  299 SQLAEGTSLVITVSKLENSF---NEEHKRLLKTEPDIFITTPGRLVDHLTNS-SISLRNLKFLVLDEADRLLNQSFQNWIPEVMSKFKSDKFDQMPGS------------------------------IIKMVFSATLTTNTEKLNDLQLYNPTLFATDSVKLYNLPPTLQEYQLQIPSAKSVYKPLYLLKLLEQLSGGKTLVFVRSNESSLKLEVLL 482          
BLAST of CX674457 vs. ExPASy Swiss-Prot
Match: DBP6_SCHPO (ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe GN=dbp6 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.630e-21
Identity = 84/265 (31.70%), Postives = 121/265 (45.66%), Query Frame = 1
Query:    1 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS----DNENRFSD-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT----------GETR-----YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 723
            +L +QV   F       GL V    GQ S+  E  +L                   E +  +D+LV+TPGRL+DHI     F+L+HL Y+V+DE DRLL +++Q W+ TV+          N++   D     + TFLP    +L   R           P P L K+V SATLT+DP+K+A L LH+P  +            GE       + +P  L+ Y +   S+ KP+ L  L+ S      + F  S E+  RL  LL
Sbjct:  216 ELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNG----------------DENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPD-IDTLLPYR----------LPSP-LQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNILCFVKSNEAAARLHRLL 451          
The following BLAST results are available for this feature:
BLAST of CX674457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RH1_ARATH3.427e-11075.28DEAD-box ATP-dependent RNA helicase 1 OS=Arabidops... [more]
RH1_ORYSJ5.688e-8964.93DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sat... [more]
DDX51_DICDI1.090e-3135.36Probable ATP-dependent RNA helicase ddx51 OS=Dicty... [more]
DDX51_HUMAN1.474e-2832.71ATP-dependent RNA helicase DDX51 OS=Homo sapiens G... [more]
DDX51_DANRE1.474e-2833.21ATP-dependent RNA helicase DDX51 OS=Danio rerio GN... [more]
DDX51_MOUSE1.379e-2630.18ATP-dependent RNA helicase DDX51 OS=Mus musculus G... [more]
DBP6_ASPNC2.435e-2334.87ATP-dependent RNA helicase dbp6 OS=Aspergillus nig... [more]
DDX51_DROME2.692e-2229.35Probable ATP-dependent RNA helicase Dbp73D OS=Dros... [more]
DBP6_CANGA5.076e-2133.94ATP-dependent RNA helicase DBP6 OS=Candida glabrat... [more]
DBP6_SCHPO6.630e-2131.70ATP-dependent RNA helicase dbp6 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_6E10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-6E10-I20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674457 ID=CX674457; Name=CX674457; organism=Citrus sinensis; type=EST; length=803bp
GATCTAGCTTTGCAGGTCAAGGATGTTTTCGCTGCGATTGCACCTGCAGT
GGGTTTGTCTGTTGGTTTGGCTGTGGGTCAATCTTCTATTGCTGATGAAA
TTTCGGAGCTTATTAAGAGACCTAAGCTCGAGGCAGGAATCTGTTATGAC
CCTGAAGATGTTTTGCAAGAGTTACAGAGTGCAGTAGATATATTGGTGGC
AACTCCAGGAAGGCTAATGGACCATATCAATGCTACTAGGGGATTTACCC
TCGAGCATCTCTGTTACCTTGTTGTTGACGAAACTGATCGATTGCTTAGG
GAGGCATATCAGGCTTGGCTGCCCACTGTGCTCCAATTAACTCGATCTGA
TAATGAAAACCGCTTTTCTGATGCAAGTACTTTTCTGCCTTCAGCATTTG
GCTCTTTAAAAACCATAAGAAGATGTGGTGTTGAAAGGGGCTTTAAGGAC
AAACCTTATCCTAGGCTTGTGAAGATGGTTTTATCTGCCACGTTAACCCA
AGATCCAAATAAGCTCGCTCAGCTTGATCTGCATCACCCTTTATTCCTGA
CCACTGGGGAAACTCGTTATAAGCTCCCAGAAAGATTGGAGTCCTACAAA
CTGATTTGTGAGTCGAAGCTGAAGCCCTTGTATTTGGTTGCACTTCTTCA
AAGTTTAGGAGAGGAGAAATGTATTGTCTTCACATCATCTGTGGAGTCAA
CTCACCGTCTCTGTACACTACTGAACCATTTTGGTGAATTGAGAATAAAG
ATAAAGGAGTATTCAGGTCTTCAACGACNATCTGTAAGAAGCAAGACGTT
GAA
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