EY665438
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 5.906e-29 Identity = 79/150 (52.67%), Postives = 92/150 (61.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASSMISSATVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMK VWPP GL+KFETLSYLPPLS ES A+ + LI IP +FE+ F Sbjct: 1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMK----------------------------------------VWPPLGLQKFETLSYLPPLSIESLAK-QIEYLILKGWIPCLEFELEHPF 109
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.455e-27 Identity = 78/150 (52.00%), Postives = 86/150 (57.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MA SMISSATVA +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM QVWPP GLKKFETLSYLPPLS E A+ L+ IP +FE+ F Sbjct: 1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSEQLAKEVDY-LLRKNLIPCLEFELEHGF 109
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26 Identity = 72/147 (48.98%), Postives = 82/147 (55.78%), Query Frame = 3 Query: 39 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 ++ISSA V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM QVWPP G KKFETLSYLPPL++E A+ LI IP +FE+ F Sbjct: 2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCM----------------------------------------QVWPPVGKKKFETLSYLPPLTEEQLAKEVEY-LIRKGWIPCLEFELEKGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 1.042e-25 Identity = 73/150 (48.67%), Postives = 84/150 (56.00%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASSMISSAT+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM QVWPP G KKFETLSYLP L+ A+ L+ IP +FE+ F Sbjct: 1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPDLTPVQLAKEVDY-LLRSKWIPCLEFELEEGF 109
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25 Identity = 77/152 (50.66%), Postives = 86/152 (56.58%), Query Frame = 3 Query: 30 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASSMISS TVAT A+R + AQA MVAPF GLKSSSAFP T+K +NDITSIASNGGRVQCM QVWPP GLKKFETLSYLPPLS ES A+ L+ +P +FE+ F Sbjct: 1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSESLAKEVDY-LLRKNWVPCLEFELETGF 110
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25 Identity = 71/146 (48.63%), Postives = 82/146 (56.16%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEV 467 MASSM+S+A VA NRAS AQASMVAPFTGLKS+SAFP T+KT DITSIASNGGRVQCM QVWPP G K +ETLSYLPPL+ E A+ L+ +P +FE+ Sbjct: 1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCM----------------------------------------QVWPPRGKKFYETLSYLPPLTREQLAKEVEY-LLRKGWVPCLEFEL 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.825e-25 Identity = 69/146 (47.26%), Postives = 82/146 (56.16%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEV 467 MASSM+S+ATVA+ NR S AQA+MVAPFTGLKS+ FP T+KTN+DITSI SNGG+VQCMK VWP G+KKFETLSYLPPL+ E A L+ IP +FE+ Sbjct: 1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMK----------------------------------------VWPTLGMKKFETLSYLPPLTREQLASEVEY-LLRSGWIPCLEFEL 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.505e-24 Identity = 77/152 (50.66%), Postives = 86/152 (56.58%), Query Frame = 3 Query: 30 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASSMISS TVAT A+R + AQA MVAPFTGLKSSSA P T+K +NDITSIASNGGRVQCM QVWPP GLKKFETLSYLPPLS ES A+ L+ +P +FE+ F Sbjct: 1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSTESLAKEVDY-LLRKNWVPCLEFELEHGF 110
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.720e-24 Identity = 66/150 (44.00%), Postives = 85/150 (56.67%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VA+ N AS AQASMVAPFTGLKSS+ FP T+K N DIT++ASN G+VQCMK VWPP GL+KFETLSYLP +S+E ++ + L+ +P +F++G F Sbjct: 1 MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMK----------------------------------------VWPPLGLRKFETLSYLPDMSNEQLSK-ECDYLLRNGWVPCVEFDIGSGF 109
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 5.720e-24 Identity = 68/124 (54.84%), Postives = 73/124 (58.87%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDES 401 MASSM+SSA VAT NR AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM QVWPP G KKFETLSYLPPLS+ES Sbjct: 1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEES 82 The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bpback to top |