CV885197
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: LIGA_RAT (Ligatin OS=Rattus norvegicus GN=Lgtn PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.428e-28 Identity = 78/221 (35.29%), Postives = 113/221 (51.13%), Query Frame = 3 Query: 144 MFKKAVEAKSHQRLSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQ----NRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAAD 794 MF KA KS+ + G+ FP + L+P K E+ V K + V VY+ GG P+ F+++ +++PTV+ LW P+LLP F+ + + V GGADLM PG+ +P GLP G+ A+ + GN AP+AVG MS+ + L +GL+GK + + H Y+D LW S + S P L DP +DSCE AD Sbjct: 1 MFAKAFRVKSNTAIKGSDRRKLRADVTVAFPTLGTDQVSELIPGKEELNVVKLYAHKGDAVTVYT-SGGNPILFELE---KNLYPTVYTLWSHPDLLPAFITWPLVLEKLV-GGADLMLPGVVVPPTGLPQVQQGDLCAIALVGNRAPVAVGVAAMSTAQMLASGLKGKGISVLHTYQDHLWRSGDKSSPPAIAPL------DP--------TDSCEEKAD 202
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: LIGA_MOUSE (Ligatin OS=Mus musculus GN=Lgtn PE=2 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 4.896e-27 Identity = 68/191 (35.60%), Postives = 103/191 (53.93%), Query Frame = 3 Query: 144 MFKKAVEAKSHQRLSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQ----NRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVP 704 MF KA KS+ + G+ FP I L+P K E+ V K + V VY+ GG P+ F+++ +++PTV+ LW P++LP F+ + + V GGADLM PG+ +P GLP G+ A+ + GN AP+A+G MS+ + L +GL+GK + + H Y+D LW S + S P Sbjct: 1 MFAKAFRVKSNTAIKGSDRRKLRADVTAAFPALGTDQISELIPGKEELNVVKLYVHKGDSVTVYT-SGGNPILFELE---KNLYPTVYTLWAYPDILPTFITWPLVLEKLV-GGADLMLPGVVVPPTGLPQVQQGDLCAIALVGNRAPVAIGVAAMSTAQMLASGLKGKGVSVLHTYQDHLWRSGDKSSPP 186
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: LIGA_BOVIN (Ligatin OS=Bos taurus GN=LGTN PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 8.352e-27 Identity = 70/192 (36.46%), Postives = 102/192 (53.12%), Query Frame = 3 Query: 144 MFKKAVEAKSHQRLSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQ----NRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPN 707 MF KA KS+ + G+ FP + L+P K E+ + K + V VY V GG P+ F+++ +++PTV+ LW P+LLP F + + V GGADLM PG+ +P GLP G+ AV + GN AP+AVG MS+ E L +GL+G+ + H Y+D LW S + S P+ Sbjct: 1 MFAKAFRVKSNTAIKGSDRRKLRADVAAVFPTLGTDQVSELVPGKEELNIVKLYAHRGDAVTVY-VSGGNPILFELE---KNLYPTVYTLWSYPDLLPTFTTWPLVLEKLV-GGADLMLPGLVVPPAGLPQVQKGDLCAVALVGNRAPVAVGVAAMSTAEMLASGLKGRGFCVLHSYQDHLWRSGDKSSPPS 187
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: LIGA_PONAB (Ligatin OS=Pongo abelii GN=LGTN PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.861e-26 Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 3 Query: 144 MFKKAVEAKSHQRLSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQ----NRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPN 707 MF KA KS+ + G+ FP + L+P K E+ + K + V VY V GG P+ F+++ +++PTV+ LW P+LLP F + + V GGADLM PG+ +P GLP G+ A+ + GN AP+A+G MS+ E L +GL+G+ + H Y+D LW S S P+ Sbjct: 1 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAVTVY-VSGGNPILFELE---KNLYPTVYTLWSYPDLLPTFTTWPLVLEKLV-GGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPS 187
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: LIGA_HUMAN (Ligatin OS=Homo sapiens GN=LGTN PE=1 SV=3) HSP 1 Score: 119.783 bits (299), Expect = 1.861e-26 Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 3 Query: 144 MFKKAVEAKSHQRLSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQ----NRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPN 707 MF KA KS+ + G+ FP + L+P K E+ + K + V VY V GG P+ F+++ +++PTV+ LW P+LLP F + + V GGADLM PG+ +P GLP G+ A+ + GN AP+A+G MS+ E L +GL+G+ + H Y+D LW S S P+ Sbjct: 1 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAVTVY-VSGGNPILFELE---KNLYPTVYTLWSYPDLLPTFTTWPLVLEKLV-GGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSGNKSSPPS 187
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: TMA20_SCHPO (Translation machinery-associated protein 20 OS=Schizosaccharomyces pombe GN=tma20 PE=2 SV=5) HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11 Identity = 43/145 (29.66%), Postives = 76/145 (52.41%), Query Frame = 3 Query: 255 IDALLPPKTEITVSKFQNRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGLPSFLSGEPWA-VKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSV 686 ID L+P K+++T K ++R+ +Y++ G +F DG I P++ + K P+ + G + +F++ GA++M PG+ LP + + + V G AP A+G T MS+ E +K +G + HY D LW ++ Sbjct: 40 IDELIPKKSQLTQIKCEDRLFLYTLNGEIILFQHFDG---PIIPSLRLVHKCPDAFTQVRVDRGAI-KFLLSGANIMIPGLVSKGGNLPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKE-MKETNKGIGIENVHYLGDNLWKTI 179
BLAST of CV885197 vs. ExPASy Swiss-Prot
Match: TMA20_YEAST (Translation machinery-associated protein 20 OS=Saccharomyces cerevisiae GN=TMA20 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.919e-11 Identity = 51/188 (27.13%), Postives = 89/188 (47.34%), Query Frame = 3 Query: 144 MFKKAVEAKSHQR--LSGAXXXXXXXXXXXXFPRASDADIDALLPPKTEITVSKFQNRVLVYSVEGGFPVFFDVDGRGTDIFPTVFALWKVPELLPCFLLKGGEVSRFVIGGADLMFPGISIPADGL---PSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWG-SVE 689 MFKK H R + + +P+ D ID L+P K++I + K ++++ +YSV+G F D ++ P++ + K PE P + G + +FV+ GA++M PG++ L P + G + +A+G M TE +K+ +G ++ + H+ D LW SVE Sbjct: 1 MFKKFTREDVHSRSKVKSSIQRTLKAKLVKQYPKIEDV-IDELIPKKSQIELIKCEDKIQLYSVDGEVLFFQKFD----ELIPSLKLVHKFPEAYPTVQVDRGAI-KFVLSGANIMCPGLTSAGADLPPAPGYEKGTIVVINAENKENALAIGE-LMMGTEEIKSVNKGHSIELIHHLGDPLWNFSVE 181 The following BLAST results are available for this feature:
BLAST of CV885197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV885197 ID=CV885197; Name=CV885197; organism=Citrus sinensis; type=EST; length=820bpback to top |