CV885128
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 258.07 bits (658), Expect = 5.806e-68 Identity = 129/178 (72.47%), Postives = 151/178 (84.83%), Query Frame = -3 Query: 311 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 844 ARR+Y+GNIPRN++NDEL IV+EHGA+E AEV+YDKY+GRSRRF FV MKTVEDANAVIEKLN TEIGGR+IKVNITEKPL +D++ QAEDS FV+SPYKVY+GNLAKTVT+E+LK FSEKG+VL AKV R PGTSKS+GFGFV+F +LNNS+LEGQ+IRVNKA Sbjct: 83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.398e-29 Identity = 68/179 (37.99%), Postives = 111/179 (62.01%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPL---VQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 R+Y+GN+P ++ + +L++I E G V E++YD+ T RSR FAFV M +VE+A I +G+++GGR +KVN E P +V + +++ FVDSP+K+YV NL+ +TS+ L+ F+++ +SAKV+ + +S GFGF+TF ++N LEG+ +R+N A Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.599e-25 Identity = 74/196 (37.76%), Postives = 102/196 (52.04%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 ++++GN+P ++D+ L + + G VE EVIYDK TGRSR F FV M T E+ A ++ NG EI GR I+VN P + + S N VDS +VYVGNL+ V LK+ FSE+G V+ AKV+ + +S GFGFVT+ SLN L+G+ IRV+ A Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283 HSP 2 Score: 68.1662 bits (165), Expect = 8.520e-11 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = -3 Query: 605 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 844 + RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+ LNG ++ GR I+V+ E+ Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.089e-25 Identity = 68/177 (38.42%), Postives = 101/177 (57.06%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLL-QAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 ++++GN+P + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++ NG E+ GR ++VN P + + S + DS +VYVGNLA V + L+ FSE+G+V+ AKV+ + +S GFGFVT+ SL+ L G+ IRV+ A Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264 HSP 2 Score: 71.633 bits (174), Expect = 7.706e-12 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = -3 Query: 608 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 844 + RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE L+G ++ GR I+V+ E Sbjct: 187 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 3.563e-25 Identity = 68/190 (35.79%), Postives = 107/190 (56.32%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF--------------VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 ++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FV M +V + A ++ NG E+ GR ++VN P + D + S+F S +VYVGNL+ V L+ FSE+G+V+ A+V+ + +S GFGFVT+ SL+ + L+G++IRV++A Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED-GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 7.938e-25 Identity = 73/196 (37.24%), Postives = 102/196 (52.04%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSN--------------------FVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 ++++GN+P ++D+ L + + G VE EVIYDK +GRSR F FV M T E+ A ++ NG EI GR I+VN P + + S N VDS +VYVGNL+ V LK+ FSE+G V+ AKV+ + +S GFGFVT+ SLN L+G+ IRV+ A Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284 HSP 2 Score: 68.5514 bits (166), Expect = 6.524e-11 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = -3 Query: 605 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 844 + RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+ LNG ++ GR I+V+ E+ Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 7.938e-25 Identity = 69/176 (39.20%), Postives = 104/176 (59.09%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 ++++GN+P ++D+++L I G VE AEVIY++ T RSR F FV M TVE+A +E LNG ++ GR++ VN P + +A +F S +VYVGNL V + L++ FSE G+V+SA+V+ T +S GFGFVT +L+ L+G+ +RVN A Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPE----RAPRGDFEPS-CRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225 HSP 2 Score: 74.3294 bits (181), Expect = 1.189e-12 Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = -3 Query: 605 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 838 RVY+GN+P ++D L ++ EHG V A V+ D+ TGRSR F FV M + + N I L+G + GR ++VN+ E+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.310e-24 Identity = 70/185 (37.84%), Postives = 104/185 (56.22%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNF---------VDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 ++++GN+ + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++ NG E+ GR ++VN P + + S E+S+F DS +VYVGNLA V + L+ FSE+G+V+ AKV+ + +S GFGFVT+ SL+ L G+ IRV+ A Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270 HSP 2 Score: 71.633 bits (174), Expect = 7.706e-12 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = -3 Query: 608 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 844 + RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE L+G ++ GR I+V+ E Sbjct: 193 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.955e-23 Identity = 62/176 (35.23%), Postives = 101/176 (57.39%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 ++++GN+P ++D++ L ++ ++ G VE AEVIY++ T +SR F FV M TVE+A +E N ++ GR + VN + + + E S Y++YVGN+ + L++ FSE G+V+SA+V+ T +S GFGFVT +L+ L+G+ IRVN A Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQS------YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306 HSP 2 Score: 75.485 bits (184), Expect = 5.337e-13 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = -3 Query: 608 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 838 R+Y+GNIP ID+ L ++ EHG V A V+YD+ TGRSR F FV M + + + I L+G + GR I+VN+ E Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CV885128 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.655e-22 Identity = 61/176 (34.66%), Postives = 100/176 (56.82%), Query Frame = -3 Query: 311 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDLSLLQAEDSNFVDSPYKVYVGNLAKTVTSEMLKKCFSEKGQVLSAKVLRVPGTSKSSGFGFVTFXXXXXXXXXXXSLNNSLLEGQRIRVNKA 838 ++++GN+P +ID++ L ++ Q+ G VE AEVIY++ T RSR F FV M TVE+A+ +E + ++ GR + VN + + + Y++YVGN+ + L++ FSE G+V+SA+V+ + +S GFGFVT +L+ L+G+ IRVN A Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERA------PRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267 HSP 2 Score: 72.4034 bits (176), Expect = 4.518e-12 Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = -3 Query: 605 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 838 R+Y+GNIP +ID+ L ++ EHG V A V++D+ +GRSR F FV M + + + I L+G + GR I+VN E+ Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269 The following BLAST results are available for this feature:
BLAST of CV885128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885128 ID=CV885128; Name=CV885128; organism=Citrus sinensis; type=EST; length=984bpback to top |