CV884532

Overview
NameCV884532
Unique NameCV884532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 325.094 bits (832), Expect = 3.366e-88
Identity = 158/170 (92.94%), Postives = 165/170 (97.06%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            IATDFQRISKIHDR+FIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGPY CQPVIAGL D+DKPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAM+KPDME +ELFET+SQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD
Sbjct:   35 IATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.412e-86
Identity = 154/170 (90.59%), Postives = 163/170 (95.88%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            IATDFQRISKIHD LFIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGP+ CQPVIAGL D++KPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAMFKPDME +ELFET+SQALLSSVDRDCLSGWGGHVY+VTP E+KERILKGRMD
Sbjct:   35 IATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD 204          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.496e-83
Identity = 145/170 (85.29%), Postives = 161/170 (94.71%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            IATDFQRI KIHD+L++GLSGLATD QTLYQR  FRHKLYQLREER+M+PETFASLVSALLYEKRFGPYFCQPVIAGL ++DKPFICTMDSIGAKELAKDFVVAGTA ESLYGACE+M+KPDMEP+ELFET+SQALLSS+DRDCLSGWGGHVY+V+P ++ ER LKGRMD
Sbjct:   35 IATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD 204          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.789e-81
Identity = 142/170 (83.53%), Postives = 162/170 (95.29%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            +ATDFQR+ KIHD+L+IGLSGLATD+QTLYQRLVFRHKLYQLREERDMKP+TFASLVSALLYEKRFGPYFCQPVIAGL ++++PFICTMD IGAKELAKDFVV+GTA ESLYGACE+M+KP+MEP+ELFET+SQAL SSVDRDCLSGWGG V +VTPTE+KE ++KGRMD
Sbjct:   35 VATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWGGFVLLVTPTEVKECVIKGRMD 204          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.745e-52
Identity = 91/170 (53.53%), Postives = 135/170 (79.41%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            +  +F ++  + D+ ++GL+GLATD QTLY+   ++  LY+ REER ++P+TFA+LVS+ LYEKRFGPYF  PV+AG+S+++ PFIC  DSIG  + A+DF+V+GTA E LYG CE++++P++EPD+LFET+SQALL++ DRDC+SGWG  VY++T  +  +R++KGR D
Sbjct:   35 LTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWGCVVYVITADKCIKRLVKGRQD 204          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.477e-51
Identity = 93/171 (54.39%), Postives = 127/171 (74.27%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDK-PFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            I+ DF ++ +I+D+ F+G+SGL TD+QTLYQ+LVFRH LY+LREERDM P   ++L++ +LYEKRFGPYF +P+I GL   D  PFI  MD IGA     DF+V GT   ++YG CE ++K DM  D+LFET+SQ +L+S+DRD LSGWG  V+++TPT++  + L GR D
Sbjct:   35 ISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPFISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDALSGWGAIVHVITPTQVITKKLLGRQD 205          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_ONCMY (Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.250e-50
Identity = 96/171 (56.14%), Postives = 132/171 (77.19%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP+TF S+VS LLYE+RFGPY+ +PVIAGL  +  +PFIC++D IG   + +DFVV+GT  E +YG CE++++PDMEP++LFET+SQA+L++VDRD +SG G  V ++   +I  R LK RMD
Sbjct:   35 VTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMGVVVQVIEKDKITTRTLKARMD 205          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_HUMAN (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.382e-49
Identity = 96/171 (56.14%), Postives = 129/171 (75.44%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+PD LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:   35 VTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_RAT (Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.022e-49
Identity = 95/171 (55.56%), Postives = 129/171 (75.44%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:   35 VTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of CV884532 vs. ExPASy Swiss-Prot
Match: PSB3_MOUSE (Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.253e-49
Identity = 94/171 (54.97%), Postives = 129/171 (75.44%), Query Frame = -1
Query:  387 IATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 896
            + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+++   +I  R LK RMD
Sbjct:   35 VTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHVIEKDKITTRTLKARMD 205          
The following BLAST results are available for this feature:
BLAST of CV884532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PSB3A_ARATH3.366e-8892.94Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSB3B_ARATH2.412e-8690.59Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]
PSB3_PICMA2.496e-8385.29Proteasome subunit beta type-3 OS=Picea mariana GN... [more]
PSB3_ORYSJ1.789e-8183.53Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3_SCHPO1.745e-5253.53Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSB3_DICDI1.477e-5154.39Proteasome subunit beta type-3 OS=Dictyostelium di... [more]
PSB3_ONCMY1.250e-5056.14Proteasome subunit beta type-3 OS=Oncorhynchus myk... [more]
PSB3_HUMAN1.382e-4956.14Proteasome subunit beta type-3 OS=Homo sapiens GN=... [more]
PSB3_RAT4.022e-4955.56Proteasome subunit beta type-3 OS=Rattus norvegicu... [more]
PSB3_MOUSE5.253e-4954.97Proteasome subunit beta type-3 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008A10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884532 ID=CV884532; Name=CV884532; organism=Citrus sinensis; type=EST; length=896bp
TTTTTTTTTTTTTTTTTGATTTTCAAATGCTATTGTAAAAAGCTTTATTA
GAGTATCCAATTTTCAAATACAGTAATCTGTTCTAAAATGCTTTACCCAG
CATATTTTCAGTTGTTTGACAACCCCAAACAAGCACTATATAGCAAGCGC
AAAAGATCAAAACCTCAATTGATAGAAACACTTTCATCCATCCAGATAAC
CGCAAGCCCACGAACTTGGTCAATTCAGTTTGAAACTATTTCAGAGTACA
ACAATTTGAGAGCTCTTAAACAACATTCTTCATAAACAAATAAAAGTCAA
GTTCAAGTCTACGGTCTTCTAATTAAAAAATACTGAAGAGTGAACGCAAC
AGAAGGGGTGGCTTTCAGCACTGCAGTTATAGATCAATCCATCCTTCCCT
TCAAGATTCTTTCCTTTATTTCAGTTGGTGTTACAATGTAGACATGTCCT
CCCCAACCACTCAAACAGTCACGGTCAACAGATGATAACAAAGCTTGAGA
TACAGTTTCAAACAACTCATCGGGTTCCATATCAGGCTTGAACATTGCCT
CACAGGCACCATAAAGAGACTCTCCAGCAGTTCCAGCAACAACAAAATCT
TTTGCAAGCTCCTTGGCTCCAATTGAGTCCATTGTGCAGATAAAGGGCTT
GTCTTCATCACTCAATCCAGCAATAACAGGTTGACAGAAGTAAGGGCCAA
ACCTTTTCTCATAAAGCAAAGCAGAGACTAAGCTAGCAAAAGTTTCAGGC
TTCATGTCCCTTTCCTCTCGCAGCTGATACAATTTGTGACGAAACACCAG
CCTTTGATACAAGGTCTGGGAATCAGTGGCGAGTCCAGAGAGGCCGATAA
AAAGGCGATCGTGAATTTTGGAAATTCGCTGAAAATCAGTGGCTAT
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