CV884445
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884445 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.811e-26 Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = -3 Query: 427 GIDTSGAIAAAVLSSRSAAFAKRSQSFIERNTVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSPSIRSGQFGFEEQQCHLNSGGSEMLPAWVEQLYMEQEQLV 894 G ++S A A AV+ +RS AFAKRS SF +T A SNL+DWGSP+GKL+WG++ E+LNK+R+S SFGI N + A + DEPDVSWV SLV+DS + FG E+ + +W EQ+Y E+EQ V Sbjct: 452 GFESSAAAAVAVMKARSTAFAKRSLSF--------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNNNNNAARD-----YRDEPDVSWVNSLVKDSTVVSERSFGMNER---------VRIMSWAEQMYREKEQTV 579
BLAST of CV884445 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.206e-26 Identity = 70/161 (43.48%), Postives = 97/161 (60.25%), Query Frame = -3 Query: 427 GIDTSGAIAAAVLSSRSAAFAKRSQSFIERNTVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPAT--ADEPDVSWVQSLVRDSPSIRSGQFGFEEQQCHLNSGGSE---MLPAWVEQLYMEQEQLV 894 G ++S A+AAAV+++RS+AFAKRS SF A + SN++DWGSP+GKL+WG+QR++LNKLR+SASFGI N + S PA +DEPDVSWV SLV+++ R E +N S LP+W EQ+Y++ EQ + Sbjct: 460 GFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNN----NNSVSRPARDYSDEPDVSWVNSLVKENAPERVN----ERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595
BLAST of CV884445 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.021e-24 Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = -3 Query: 550 FGIDTSGAIAAAVLSSRSAAFAKRSQSFIERN-TVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRD 897 FG+D S +A A++SSR++AFAKRSQSFI+R SP +T A PS L+DWGSPDGKLDWGVQ ++L+KLRKSASF R + +T A A EPDVSWV SLV+D Sbjct: 474 FGLDHS--MAKAIMSSRASAFAKRSQSFIDRGGRAPAARSLMSPATTGA--PSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQ----SAMPVATHAAAAEPDVSWVNSLVKD 582
BLAST of CV884445 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22 Identity = 67/151 (44.37%), Postives = 84/151 (55.63%), Query Frame = -3 Query: 424 AAAVLSSRSAAFAK-RSQSFIERNT-VSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSPSIRSGQFGFEEQQCHLNSGGSEMLPAWVEQLYMEQEQLVA 870 ++AVL+SR+A FAK RSQSFIERN ++ H SS +T L DWGS DGKLDW VQ ++L KLRKS SF +R+ G T +EPDVSWV+ LV++ R + P W+EQ YME EQ VA Sbjct: 484 SSAVLASRAAEFAKQRSQSFIERNNGLNHHPAISSMTTTC------LNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPNEGT--GLEEPDVSWVEPLVKEPQETR-------------------LAPVWMEQSYMETEQTVA 607
BLAST of CV884445 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11 Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = -3 Query: 544 GIDTSGAIAAAVLSSRS-------AAFAKRS-QSFIERNTVSRHSGFSSPDSTAAV---MPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSP 894 GI + G ++ + S S AA A+R Q R+ SR G S+ ++ V + S+ + WGSP G DWGV E+L KLR+S+SF +RS G D+PD+SWV +LV++SP Sbjct: 588 GISSPGRMSPRCVESGSPMNSHLAAALAQREKQQQTMRSLSSRDLGPSAARASGVVGSPLSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG--------------DDPDLSWVHTLVKESP 701 The following BLAST results are available for this feature:
BLAST of CV884445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV884445 ID=CV884445; Name=CV884445; organism=Citrus sinensis; type=EST; length=899bpback to top |