EY665266

Overview
NameEY665266
Unique NameEY665266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1045
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665266_ssr967 microsatellite EY665266_ssr967:967..978. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665266 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.620e-39
Identity = 75/105 (71.43%), Postives = 93/105 (88.57%), Query Frame = 2 
Query:   17 KKLKECLKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTT 331
            ++ K  +KHVLLA FK+G + ++I++LIK YANLVNLIEPMK+F WGK+VSIENLHQG+THIFESTFES E VAEY+AHPAHVE+A +FL +L+KVLVIDYKPT+
Sbjct:    2 EEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTS 106
[Close]
BLAST of EY665266 vs. ExPASy Swiss-Prot
Match: Y5258_ARATH (Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.933e-16
Identity = 39/95 (41.05%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:   38 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV-SIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDY 319
            KH+++ KFKE T   ++D+++K   NLV+ I+ +KSF+WG++  S + L QGFTH F  TFE+ +G   + +HP HVE++  F A ++K++++D+
Sbjct:    7 KHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDF 98
The following BLAST results are available for this feature:
BLAST of EY665266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
POP3_ARATH3.620e-3971.43Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
Y5258_ARATH1.933e-1641.05Uncharacterized protein At5g22580 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-H11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665266 ID=EY665266; Name=EY665266; organism=Citrus sinensis; type=EST; length=1045bp
CCACGCGTCCGTATGGAAGAAGCTAAAGGAGTGCCTGAAGCACGTACTTC
TGGCCAAGTTCAAAGAAGGGACTGCTCAAGATCAAATTGATCAGCTCATC
AAAGACTATGCAAATCTTGTGAATCTCATTGAACCCATGAAGTCTTTCCA
ATGGGGCAAGAATGTGAGCATTGAGAATCTTCATCAGGGTTTCACTCATA
TTTTTGAATCTACCTTTGAGAGCACAGAGGGTGTTGCAGAGTATGTAGCT
CATCCAGCACATGTTGAATACGCAAACTTGTTCCTGGCCAACTTGGAGAA
AGTTCTCGTGATTGACTACAAACCGACAACTGTACGTGTCTGAGTTGTAC
TAGTAGGGAAAGTGATCAGTCTTCCATGTGGTTGTTATTTGAATATTGTG
TCCGTTTTCTTGACCAATATTGGGGTGACTTCATTTGTATGTGGAAATTT
GATGGGGGGGAAAACCCAAGAGTTTTATGGTATTTGGATATATTGATATG
AACAAAAAGGGGAAGTTTGAATACTCTCATATTTTATAGATTTTCAAAAA
AAAAAAAAAAAAAAAAAAAGGGCGGCCCCTTCAAAAGAATCCAAAGTTTA
AGGTACGCGGGGGAGGGGAAATCCAAACTCCTTTCAAAAAGGGGCCCCTA
AAATTCAATTTAATGGGGCCGGCCTTTTTAAAAACGACTGGAGACGGGGG
AAAAACCCTGGGGTTAACCCAATTTAAATCCCCTTTGCGACAAACCCCCA
CCTTTCCCAGTGGGGGATAAAAAACAAAAAGAGCCCCGCAAAAGAACACC
CCTTTCCCCCAAAATTTTTAACAACAATAAAAATGGAAAAAGGGAAAACC
ACACTTGAAACCAGCGCCAAATTAACGCGGGGGAGAGTATGGGGAGAATC
AAACCACAAAGGAGGCAACTACTTAATTATGCTAGTAATGATCACTAAAA
AGAACGCCACGTATAAATTTATTTATTTTGTCTTACACTTTGTACAATAA
TACTGCAGAGGAAAACAAGTAACGGCAGACACGACCGCATACCGT
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