CX672052

Overview
NameCX672052
Unique NameCX672052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6561 contig Csv1_Contig6561:500..1363. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX672052 vs. ExPASy Swiss-Prot
Match: Y2734_ARATH (Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.648e-76
Identity = 145/177 (81.92%), Postives = 156/177 (88.14%), Query Frame = -1
Query:  334 VPRPWVIDDLETFXXXXXXXXXXXXVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 864
            VPRPWVIDDLE F            VIFVDNSGADIILGILPFARELLRRG QV+LAAN+LPSIND+T  EL EI+S+LKDE GQL+GVDTSKLLIANSGNDLPVIDL+ VSQELAYL+SDADLVI+EGMGRGIETNLYAQFKCDSLKIGMVKH EVA+FLGGRLYDCVFK+NEV S
Sbjct:  191 VPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS 367          
BLAST of CX672052 vs. ExPASy Swiss-Prot
Match: PANK2_ARATH (Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.645e-34
Identity = 87/204 (42.65%), Postives = 118/204 (57.84%), Query Frame = -1
Query:  337 RPWVIDDLETFXXXXXXXXXXXXV------IFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMS---------KLKDEKGQLMGVD--------------TSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQ-FLGGRLYDCVFKYNEVS 858
            RPW +DD + F                   +FVDNSGAD+ILG+LP ARE LRRGT+V+L AN LP++NDVT  EL +I++         +   E G L+ VD              ++ L++  +G   P IDL  VS ELA  A DADLV+LEGMGR + TN  AQF+C++LK+ MVK+  +A+  + G +YDCV +Y   S
Sbjct:  667 RPWRVDDFDAFKERMLGSGGKQPHRHKRALLFVDNSGADVILGMLPLAREFLRRGTEVVLVANSLPALNDVTAMELPDIVAGAAKHCDILRRAAEMGGLL-VDAMVNPGDGSKKDSTSAPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVVLEGMGRALHTNFNAQFQCEALKLAMVKNQRLAEKLIKGNIYDCVCRYEPPS 869          
BLAST of CX672052 vs. ExPASy Swiss-Prot
Match: PANK4_HUMAN (Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.233e-32
Identity = 70/173 (40.46%), Postives = 108/173 (62.43%), Query Frame = -1
Query:  349 RPWVIDDLETFXXXXXXXXXXXXVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQL-MGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASD--ADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKY 858
            RPW++D    +            +IF DNSG DIILG+ PF RELL RGT+VILA N  P++NDVT+ E + +  ++      +   +   +LL+  +G+  P +DL+ + + LA L  +  ADLV++EGMGR + TN +A  +C+SLK+ ++K+  +A+ LGGRL+  +FKY
Sbjct:  596 RPWLVDSYSEWLQRLKGPPHKCALIFADNSGIDIILGVFPFVRELLLRGTEVILACNSGPALNDVTHSESLIVAERIAGMDPVVHSALQEERLLLVQTGSSSPCLDLSRLDKGLAALVRERGADLVVIEGMGRAVHTNYHAALRCESLKLAVIKNAWLAERLGGRLFSVIFKY 768          
BLAST of CX672052 vs. ExPASy Swiss-Prot
Match: PANK4_PONAB (Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.515e-32
Identity = 70/173 (40.46%), Postives = 108/173 (62.43%), Query Frame = -1
Query:  349 RPWVIDDLETFXXXXXXXXXXXXVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQL-MGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASD--ADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKY 858
            RPW++D    +            +IF DNSG DIILG+ PF RELL RGT+VILA N  P++NDVT+ E + +  ++      +   +   +LL+  +G+  P +DL+ + + LA L  +  ADLV++EGMGR + TN +A  +C+SLK+ ++K+  +A+ LGGRL+  +FKY
Sbjct:  596 RPWLVDSYSEWLQRLKGPPHKCALIFADNSGIDIILGVFPFVRELLLRGTEVILACNSGPALNDVTHSESLIVAERIAGMDPVVHSALREERLLLVQTGSSSPCLDLSRLDKGLAALVRERGADLVVIEGMGRAVHTNYHAALRCESLKLAVIKNAWLAERLGGRLFSVIFKY 768          
BLAST of CX672052 vs. ExPASy Swiss-Prot
Match: PANK4_MACFA (Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.737e-31
Identity = 70/173 (40.46%), Postives = 107/173 (61.85%), Query Frame = -1
Query:  349 RPWVIDDLETFXXXXXXXXXXXXVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQL-MGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASD--ADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKY 858
            RPW++D    +            +IF DNSG DIILG+ PF RELL RGT+VILA N  P++NDVT+ E + +  ++      +   +   +LL+  +G+  P +DL+ + + LA L  +  ADLV++EGMGR + TN +A   C+SLK+ ++K+  +A+ LGGRL+  +FKY
Sbjct:  596 RPWLVDSYSEWLQRLKGPPHKCALIFADNSGIDIILGVFPFVRELLLRGTEVILACNSGPALNDVTHGESLIVAERIAGMDPVVHSALREERLLLVQTGSSSPCLDLSRLDKGLAALVRERGADLVVIEGMGRAVHTNYHAALCCESLKLAVIKNAWLAERLGGRLFSVIFKY 768          
BLAST of CX672052 vs. ExPASy Swiss-Prot
Match: PANK4_RAT (Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.668e-31
Identity = 70/173 (40.46%), Postives = 107/173 (61.85%), Query Frame = -1
Query:  349 RPWVIDDLETFXXXXXXXXXXXXVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQL-MGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASD--ADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKY 858
            RPW++D    +            +IF DNSG DIILG+ PF RELL RG +VILA N  P++NDVTY E + +  ++      +   +   +LL+  +G+  P +DL+ + + LA L  +  ADLV++EGMGR + TN +A  +C+SLK+ +VK+  +A+ LGG+L+  +FKY
Sbjct:  596 RPWLVDSYTKWLQRLKGPPHKCALIFADNSGIDIILGVFPFVRELLCRGIEVILACNSGPALNDVTYSESLIVAERIAAMDPIICTALREDRLLLVQTGSSPPCLDLSRLDKGLAVLVRERGADLVVIEGMGRAVHTNYHALLRCESLKLAVVKNAWLAERLGGQLFSVIFKY 768          
BLAST of CX672052 vs. ExPASy Swiss-Prot
Match: PANK4_MOUSE (Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.931e-25
Identity = 72/220 (32.73%), Postives = 108/220 (49.09%), Query Frame = -1
Query:  349 RPWVIDDLETFXXXXXXXXXXXXVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQL-MGVDTSKLLIANSGNDLPVIDL-----------------------------------------------TAVSQELAYLASD--ADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKY 858
            RPW++D    +            +IF DNSG DIILG+ PF RELL RGT+VILA N  P++NDVTY E + +  ++      +   +   +LL+  +G+  P +DL                                               + + + LA L  +  ADLV++EGMGR I TN +A  +C+SLK+ +VK+  +A+ LGG+L+  +FKY
Sbjct:  596 RPWLVDSYTKWLQRLKGPPHKCALIFADNSGIDIILGVFPFVRELLFRGTEVILACNSGPALNDVTYSESLIVAERIAAMDPIICTALREDRLLLVQTGSSSPCLDLSLCTSRTTTCMVLPFAMWVLWTKLKSLVEKCLSPLSILLACSVLSAKSRLDKGLAVLVRERGADLVVIEGMGRAIHTNYHALLRCESLKLAVVKNAWLAERLGGQLFSVIFKY 815          
The following BLAST results are available for this feature:
BLAST of CX672052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y2734_ARATH3.648e-7681.92Uncharacterized protein At2g17340 OS=Arabidopsis t... [more]
PANK2_ARATH2.645e-3442.65Pantothenate kinase 2 OS=Arabidopsis thaliana GN=A... [more]
PANK4_HUMAN3.233e-3240.46Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=... [more]
PANK4_PONAB5.515e-3240.46Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=... [more]
PANK4_MACFA2.737e-3140.46Pantothenate kinase 4 OS=Macaca fascicularis GN=PA... [more]
PANK4_RAT4.668e-3140.46Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank... [more]
PANK4_MOUSE2.931e-2532.73Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_14F08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-14F08-K16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672052 ID=CX672052; Name=CX672052; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTTTTTTTTTAACAGATACGTACAAACGTCCACCCACAAAGCA
CCTCAACTTGAATAAAATAATGATAATAACAGTAATTATGAAGCCGAACT
TCATAAACAGGAAAATACAATCCACCCGACAGGAAAATACAATCCACCCG
ACATCACAAGTATGGAAAAACCATTCGGGTGCAAGTCTTCGGATTTTCAG
TTTCCATTATTGCCTATAAGGGTGAAATTTTGACATTCATATGCTTAAGT
TTTTATGCTCTAATATTCTATGTGCACTGAATGATCGACACAGGACGAAT
AGGGTTAGGGGGACAGGCAAAGAATCAACTTTAACTTGAAACTTCATTGT
ATTTAAAGACACAATCATAGAGCCGTCCTCCTAGAAACTGGGCAACCTCG
GGATGTTTGACCATCCCAATCTTCAAGGAATCACATTTGAATTGAGCGTA
CAGATTTGTTTCAATTCCACGACCCATTCCTTCTAAGATAACTAGGTCTG
CATCACTCGCTAGGTAGGCAAGCTCTTGTGATACTGCTGTAAGATCAATA
ACTGGCAAATCATTGCCAGAATTGGCAATCAAAAGCTTTGAAGTATCAAC
GCCCATGAGCTGCCCCTTTTCATCCTTCAACTTTGACATGATTTCAATCA
GTTCAGGGTAGGTTACATCATTGATTGAAGGTAAGTCATTAGCAGCCAAA
ATAACCTGAGTTCCACGTCGGAGTAATTCCCTTGCAAACGGTAGGATACC
TAAAATTATATCCGCTCCAGAATTATCAACAAAAATGACAGCCTTCTTCC
AAGCTTTCTTGCTCCATTTCACTTTAAAGGTCTCCAAGTCATCGATAACC
CAAGGCCGAGGCAC
back to top