CX671856

Overview
NameCX671856
Unique NameCX671856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7993 contig Csv1_Contig7993:26..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671856 vs. ExPASy Swiss-Prot
Match: CASTO_LOTJA (Putative ion channel CASTOR, chloroplastic OS=Lotus japonicus GN=CASTOR PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15
Identity = 43/126 (34.13%), Postives = 79/126 (62.70%), Query Frame = -2
Query:  369 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDN--KKVINPVPKSEPLSLTLTDSLIVISELE 740
            +++EI+D +    ++ +K S  Y+ + E++S+  A V E+ ++N+V +++   EG+E++++   +Y++EGE  SF+E+  RA  RRE+ IGY   N  + VINP  K+     +L D  +VI+E E
Sbjct:  729 IISEILDPRTKNLLSMSKIS-DYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQADIYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPAKTGRRKWSLKDVFVVITEKE 853          
BLAST of CX671856 vs. ExPASy Swiss-Prot
Match: DMI1_ORYSJ (Probable ion channel DMI1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0870100 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 43/124 (34.68%), Postives = 75/124 (60.48%), Query Frame = -2
Query:  375 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGY--VKDNKKVINPVPKSEPLSLTLTDSLIVISE 740
            +++EI+DS+    ++ +K S  Y+ + E++S+  A V E+ ++N V +++   EG+E+ ++    Y+ E E  SFF++  RA  R EV IGY    D++ +INP  KSE    +L D  +VIS+
Sbjct:  819 IISEILDSRTRNLVSVSKIS-DYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIRSAEFYLYEQEELSFFDIMVRARERDEVVIGYRLANDDQAIINPEQKSEIRKWSLDDVFVVISK 941          
BLAST of CX671856 vs. ExPASy Swiss-Prot
Match: DMI1L_ORYSJ (Probable ion channel DMI1-like, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0843600 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 38/126 (30.16%), Postives = 74/126 (58.73%), Query Frame = -2
Query:  369 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGY--VKDNKKVINPVPKSEPLSLTLTDSLIVISELE 740
            +++EI+D +    ++ +K S  Y+ + E++S+  A V E+ ++N+V +++   +G+E+ ++   LY++E E  +FFE+  R   R+E+ IGY  V   + +INP  K      +  D  +VI+E E
Sbjct:  769 IISEILDPRTKNLLSVSKIS-DYVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE 893          
BLAST of CX671856 vs. ExPASy Swiss-Prot
Match: DMI1_MEDTR (Putative ion channel DMI-1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 36/126 (28.57%), Postives = 72/126 (57.14%), Query Frame = -2
Query:  369 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGY--VKDNKKVINPVPKSEPLSLTLTDSLIVISELE 740
            +++EI+DS+    ++ ++ S  Y+ + E++S+  A V E+ ++N V +++   EG+E+ +K    Y+ + E   F+++  R   R+E+ IGY      + +INP  KS P   +L D  +V++  E
Sbjct:  758 IISEILDSRTRNLVSVSRIS-DYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLANQERAIINPSEKSVPRKWSLDDVFVVLASGE 882          
BLAST of CX671856 vs. ExPASy Swiss-Prot
Match: DMI1_ARATH (Putative ion channel DMI1 OS=Arabidopsis thaliana GN=At5g49960 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 36/123 (29.27%), Postives = 72/123 (58.54%), Query Frame = -2
Query:  378 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGY--VKDNKKVINPVPKSEPLSLTLTDSLIVIS 740
            +++EI+DS+    ++ ++ S  Y+ + E++S+  A V E+ ++N V K++   +G+E+ ++    Y+ + E   F+++  RA  R+E+ IGY      + VINP  KS+    +L D  +VI+
Sbjct:  700 VISEILDSRTKNLVSVSRIS-DYVLSNELVSMALAMVAEDKQINRVLKELFAEKGNELCIRPAEFYIYDQEEVCFYDIMRRARQRQEIIIGYRLAGMEQAVINPTDKSKLTKWSLDDVFVVIA 821          
The following BLAST results are available for this feature:
BLAST of CX671856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CASTO_LOTJA1.184e-1534.13Putative ion channel CASTOR, chloroplastic OS=Lotu... [more]
DMI1_ORYSJ2.233e-1434.68Probable ion channel DMI1, chloroplastic OS=Oryza ... [more]
DMI1L_ORYSJ2.090e-1230.16Probable ion channel DMI1-like, chloroplastic OS=O... [more]
DMI1_MEDTR6.081e-1228.57Putative ion channel DMI-1 OS=Medicago truncatula ... [more]
DMI1_ARATH3.018e-1129.27Putative ion channel DMI1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_13E09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13E09-I17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671856 ID=CX671856; Name=CX671856; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTCCCGCCTAAGTAAGTACTTTTAGTATTGAAATCAGAGAGGAA
GTTAATCTGATACAATTTTATCCTAATCATATACCGAGGCAAGAACACTG
AAACGAGGGTCTTCTCTTGTACTTGTAAACCTTACCATTTCAAGGATGTA
GAAACAAGAAGTTTTCTCGCAAATTTACAGCTTGAATGGTATTCAATTTG
GATAACGGATTTTCTTGTAGTAAAATTTTAGAGAATACTAGTTCATAATC
GAACTTCCTAATCCTATCCATACAAGATAAAAACAGTAATGCCCCCTGCA
ATGGTAATGGGAAGCGATAACCAATGAAGATTGAAAATTTGATTTTAAAG
GACGATGGGTTGTTCTCCTTCAAGTTCTGATATAACAATTAATGAATCTG
TCAATGTAAGGGATAGTGGTTCGGACTTTGGAACTGGATTAATAACCTTC
TTGTTGTCCTTCACATAACCTATGGCTACTTCTCTCCGTAGATGAGCTCT
CTCAGAAAGCTCGAAGAATGATGGATTCTCTCCCTCTTTCATGTACAGGC
TAATATCCTTTACATATATTTCATCACCTTCAGCATTGAGAATGTCTTTC
CACACCTCATTCAGTTCATTGTTCTCCACAACTTGAGCTGTTACAAGGCT
CATTATTTCCTCAGCAGCAATATAAGTGAGGGATGGCTTATTTCTTGCAA
TTTGTTTTCCCAGTTTTGAGTCAACAATCTCAGCAACTAGATTTTGTACC
TTCACTCCAAGTTTGTTACAGATATTTTCAGCAAGAAGAAGAGAATATGC
AGACTGTTTATCTGCCCTGGAAGGATCTCCAAGAAGCCATTCTCTA
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