CX671856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671856 vs. ExPASy Swiss-Prot
Match: CASTO_LOTJA (Putative ion channel CASTOR, chloroplastic OS=Lotus japonicus GN=CASTOR PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.184e-15 Identity = 43/126 (34.13%), Postives = 79/126 (62.70%), Query Frame = -2 Query: 369 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGYVKDN--KKVINPVPKSEPLSLTLTDSLIVISELE 740 +++EI+D + ++ +K S Y+ + E++S+ A V E+ ++N+V +++ EG+E++++ +Y++EGE SF+E+ RA RRE+ IGY N + VINP K+ +L D +VI+E E Sbjct: 729 IISEILDPRTKNLLSMSKIS-DYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQADIYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPAKTGRRKWSLKDVFVVITEKE 853
BLAST of CX671856 vs. ExPASy Swiss-Prot
Match: DMI1_ORYSJ (Probable ion channel DMI1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0870100 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14 Identity = 43/124 (34.68%), Postives = 75/124 (60.48%), Query Frame = -2 Query: 375 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGY--VKDNKKVINPVPKSEPLSLTLTDSLIVISE 740 +++EI+DS+ ++ +K S Y+ + E++S+ A V E+ ++N V +++ EG+E+ ++ Y+ E E SFF++ RA R EV IGY D++ +INP KSE +L D +VIS+ Sbjct: 819 IISEILDSRTRNLVSVSKIS-DYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIRSAEFYLYEQEELSFFDIMVRARERDEVVIGYRLANDDQAIINPEQKSEIRKWSLDDVFVVISK 941
BLAST of CX671856 vs. ExPASy Swiss-Prot
Match: DMI1L_ORYSJ (Probable ion channel DMI1-like, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0843600 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12 Identity = 38/126 (30.16%), Postives = 74/126 (58.73%), Query Frame = -2 Query: 369 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGY--VKDNKKVINPVPKSEPLSLTLTDSLIVISELE 740 +++EI+D + ++ +K S Y+ + E++S+ A V E+ ++N+V +++ +G+E+ ++ LY++E E +FFE+ R R+E+ IGY V + +INP K + D +VI+E E Sbjct: 769 IISEILDPRTKNLLSVSKIS-DYVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE 893
BLAST of CX671856 vs. ExPASy Swiss-Prot
Match: DMI1_MEDTR (Putative ion channel DMI-1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12 Identity = 36/126 (28.57%), Postives = 72/126 (57.14%), Query Frame = -2 Query: 369 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGY--VKDNKKVINPVPKSEPLSLTLTDSLIVISELE 740 +++EI+DS+ ++ ++ S Y+ + E++S+ A V E+ ++N V +++ EG+E+ +K Y+ + E F+++ R R+E+ IGY + +INP KS P +L D +V++ E Sbjct: 758 IISEILDSRTRNLVSVSRIS-DYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLANQERAIINPSEKSVPRKWSLDDVFVVLASGE 882
BLAST of CX671856 vs. ExPASy Swiss-Prot
Match: DMI1_ARATH (Putative ion channel DMI1 OS=Arabidopsis thaliana GN=At5g49960 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11 Identity = 36/123 (29.27%), Postives = 72/123 (58.54%), Query Frame = -2 Query: 378 LVAEIVDSKLGKQIARNKPSLTYIAAEEIMSLVTAQVVENNELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFFELSERAHLRREVAIGY--VKDNKKVINPVPKSEPLSLTLTDSLIVIS 740 +++EI+DS+ ++ ++ S Y+ + E++S+ A V E+ ++N V K++ +G+E+ ++ Y+ + E F+++ RA R+E+ IGY + VINP KS+ +L D +VI+ Sbjct: 700 VISEILDSRTKNLVSVSRIS-DYVLSNELVSMALAMVAEDKQINRVLKELFAEKGNELCIRPAEFYIYDQEEVCFYDIMRRARQRQEIIIGYRLAGMEQAVINPTDKSKLTKWSLDDVFVVIA 821 The following BLAST results are available for this feature:
BLAST of CX671856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671856 ID=CX671856; Name=CX671856; organism=Citrus sinensis; type=EST; length=846bpback to top |