CX303385

Overview
NameCX303385
Unique NameCX303385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13356 contig Csv1_Contig13356:39..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK21_ARATH (Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 6.431e-63
Identity = 114/125 (91.20%), Postives = 120/125 (96.00%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQVRAAENSRVRA 378
            +DMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYL KY LELDPQLEALVGRHSRKPWS+FIN+DNQHLVSPEAIDFLDKLLRYDHQDRLTA+EAMAH YF QVRAAE SR+R+
Sbjct:  208 LDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLNKYQLELDPQLEALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHAYFAQVRAAETSRMRS 332          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK22_ARATH (Casein kinase II subunit alpha-2 OS=Arabidopsis thaliana GN=CKA2 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 4.168e-62
Identity = 112/124 (90.32%), Postives = 120/124 (96.77%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQVRAAENSRVR 375
            +DMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYL KY LELD QLEALVGRHSRKPWS+FIN+DN+HLVSPEAID+LDKLLRYDHQDRLTA+EAMAHPYF QVRAAE+SR+R
Sbjct:  208 LDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLNKYQLELDTQLEALVGRHSRKPWSKFINADNRHLVSPEAIDYLDKLLRYDHQDRLTAKEAMAHPYFAQVRAAESSRMR 331          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK2A_MAIZE (Casein kinase II subunit alpha OS=Zea mays GN=ACK2 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.287e-60
Identity = 109/125 (87.20%), Postives = 115/125 (92.00%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQVRAAENSRVRA 378
            +DMWSLGCMFAGMIFRKEPFFYGHDN DQLVKIAKVLGTD LN YL KY +ELDPQLEALVGRHSRKPW +F+N+DNQHLVSPEAIDFLDKLLRYDHQ+RLTA EAM HPYF QVRAAENSR RA
Sbjct:  208 LDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALVGRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQVRAAENSRTRA 332          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK23_ARATH (Probable casein kinase II subunit alpha OS=Arabidopsis thaliana GN=At2g23080 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.141e-58
Identity = 106/124 (85.48%), Postives = 116/124 (93.55%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQVRAAENSRVR 375
            +DMWSLGCMFAGMIFRKEPFFYGHDN DQLVKIAKVLGT+EL+ YL KY L+LDPQLEALVGRH  KPWS+FIN+DNQHLVSPEAIDFLDKLL+YDHQDRLTAREAM HPYF QV+AAE+SR+R
Sbjct:  208 LDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTNELDHYLNKYQLDLDPQLEALVGRHVPKPWSKFINADNQHLVSPEAIDFLDKLLQYDHQDRLTAREAMDHPYFAQVKAAESSRLR 331          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK21_RAT (Casein kinase II subunit alpha OS=Rattus norvegicus GN=Csnk2a1 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.015e-49
Identity = 86/115 (74.78%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+GHDN DQLV+IAKVLGT++L  Y++KY++ELDP+   ++GRHSRK W RF++S+NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY V
Sbjct:  213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK21_RABIT (Casein kinase II subunit alpha OS=Oryctolagus cuniculus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.015e-49
Identity = 86/115 (74.78%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+GHDN DQLV+IAKVLGT++L  Y++KY++ELDP+   ++GRHSRK W RF++S+NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY V
Sbjct:  213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK21_HUMAN (Casein kinase II subunit alpha OS=Homo sapiens GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.015e-49
Identity = 86/115 (74.78%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+GHDN DQLV+IAKVLGT++L  Y++KY++ELDP+   ++GRHSRK W RF++S+NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY V
Sbjct:  213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK21_BOVIN (Casein kinase II subunit alpha OS=Bos taurus GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.015e-49
Identity = 86/115 (74.78%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+GHDN DQLV+IAKVLGT++L  Y++KY++ELDP+   ++GRHSRK W RF++S+NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY V
Sbjct:  213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK2A_DROME (Casein kinase II subunit alpha OS=Drosophila melanogaster GN=CkIIalpha PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.177e-48
Identity = 87/115 (75.65%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+GHDN DQLV+IAKVLGT+EL AYL+KY+++LDP+   ++ RHSRK W RF++SDNQHLVSPEA+DFLDKLLRYDH DRLTAREAMAHPYF  +
Sbjct:  211 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEELYAYLDKYNIDLDPRFHDILQRHSRKRWERFVHSDNQHLVSPEALDFLDKLLRYDHVDRLTAREAMAHPYFLPI 325          
BLAST of CX303385 vs. ExPASy Swiss-Prot
Match: CSK21_CHICK (Casein kinase II subunit alpha OS=Gallus gallus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.177e-48
Identity = 85/115 (73.91%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    4 VDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLEKYHLELDPQLEALVGRHSRKPWSRFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFYQV 348
            +DMWSLGCM A MIFRKEPFF+GHDN DQLV+IAKVLGT++L  Y++KY++ELDP+   ++GRHSRK W RF++S+NQHLVSPEA+DFLDKLLRYDHQ RLTAREAM HPYFY +
Sbjct:  213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYPI 327          
The following BLAST results are available for this feature:
BLAST of CX303385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CSK21_ARATH6.431e-6391.20Casein kinase II subunit alpha-1 OS=Arabidopsis th... [more]
CSK22_ARATH4.168e-6290.32Casein kinase II subunit alpha-2 OS=Arabidopsis th... [more]
CSK2A_MAIZE2.287e-6087.20Casein kinase II subunit alpha OS=Zea mays GN=ACK2... [more]
CSK23_ARATH2.141e-5885.48Probable casein kinase II subunit alpha OS=Arabido... [more]
CSK21_RAT9.015e-4974.78Casein kinase II subunit alpha OS=Rattus norvegicu... [more]
CSK21_RABIT9.015e-4974.78Casein kinase II subunit alpha OS=Oryctolagus cuni... [more]
CSK21_HUMAN9.015e-4974.78Casein kinase II subunit alpha OS=Homo sapiens GN=... [more]
CSK21_BOVIN9.015e-4974.78Casein kinase II subunit alpha OS=Bos taurus GN=CS... [more]
CSK2A_DROME1.177e-4875.65Casein kinase II subunit alpha OS=Drosophila melan... [more]
CSK21_CHICK1.177e-4873.91Casein kinase II subunit alpha OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank descriptionC08030F09SK PhyRootSw1 Citrus sinensis cDNA clone C08030F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX303385 ID=CX303385; Name=CX303385; organism=Citrus sinensis; type=EST; length=659bp
GAGGTGGACATGTGGAGCCTCGGCTGTATGTTTGCAGGAATGATTTTTCG
CAAGGAACCATTCTTTTATGGTCATGACAATCAAGACCAGCTTGTCAAAA
TTGCAAAGGTTCTGGGAACCGATGAGTTAAATGCATACTTGGAAAAATAT
CATTTAGAGCTTGATCCGCAGCTTGAAGCTCTAGTTGGAAGGCATAGCAG
GAAGCCATGGTCCAGATTCATTAATTCAGATAATCAGCATCTAGTTTCCC
CAGAGGCCATTGATTTTCTTGATAAGCTTCTTCGCTATGATCACCAGGAC
AGGCTTACAGCCAGAGAGGCAATGGCTCATCCTTATTTCTATCAAGTGAG
GGCTGCAGAAAATAGCAGAGTCCGCGCGCATTAGCTCCATGCTTAGTCCC
TTCCTGAGTATACTTGTATTTCATTTGGGCCCATTCTTATGGATGGAGTA
TATTTCTGGTCTATTGATAAGTCGTTGTACCAGTAGTCTATAGGTCGCAT
CCATATTTTCAGATGGTCTATCGACAAGTCGTTGGTAGTATACTTGTATT
TCATTTGAGCTTTAATGTTGCTCGTGTGGACTGTACAGCTTGTTCCGTTG
TGTTTGCCTTATACATGTCAATTATTTGTACAAAATTACAGATAATAACT
CTTCTTTTG
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