GR312986

Overview
NameGR312986
Unique NameGR312986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.058e-25
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG A ETSPKFIKSGDAAIVKM+PSKPMCVEAFTDYPPLGRFAVRD+RQTVAVGVIK+V+
Sbjct:  382 TGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVD 441          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.921e-25
Identity = 53/60 (88.33%), Postives = 59/60 (98.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG ATE++PKFIKSGD+AIVKM+PSKPMCVEAFTDYPPLGRFAVRD+RQTVAVGVIK+VE
Sbjct:  382 TGKATESAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVE 441          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.181e-24
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG + E +PKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  382 TGKSVENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVE 441          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.542e-24
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG A E SPKFIKSGDAAIVKM+PSKPMCVEAFTDYPPLGRFAVRD+RQTVAVGVIK+V+
Sbjct:  382 TGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVD 441          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.630e-24
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG A E SPKFIKSGDAAIVKMVPSKPMCVEAFT+YPPLGRFAVRD+RQTVAVGVIK VE
Sbjct:  382 TGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVE 441          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.435e-24
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG A E SPKFIKSGDAAIVKM+PSKPMCVEAFT+YPPLGRFAVRD+RQTVAVGVIK VE
Sbjct:  382 TGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVE 441          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.486e-24
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E SPKFIKSGDAAIVKMVPSKPMCVEAFT+YPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  382 TGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVE 441          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.486e-24
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSV 177
            TG + E +PKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRD+RQTVAVGVIKSV
Sbjct:  380 TGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSV 438          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +PKF+KSGDA+IVKMVPSKPMCVEAFTDYPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  381 TGKKMEDNPKFVKSGDASIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVE 440          
BLAST of GR312986 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 TGXATETSPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDVRQTVAVGVIKSVE 180
            TG   E +PKF+KSGDAAIVKMVP+KPMCVEAFTDYPPLGRFAVRD+RQTVAVGVIKSVE
Sbjct:  381 TGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVE 440          
The following BLAST results are available for this feature:
BLAST of GR312986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
EF1A_SORMA4.058e-2590.00Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_TRIRE6.921e-2588.33Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_COCIM1.181e-2490.00Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A_NEUCR1.542e-2488.33Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_PODAN2.630e-2490.00Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_PODCU3.435e-2488.33Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A_YARLI4.486e-2490.00Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_AURPU4.486e-2489.83Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A_PICGU9.995e-2486.67Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A_CANAL9.995e-2486.67Elongation factor 1-alpha OS=Candida albicans GN=T... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06057A12 RindPdigS Citrus sinensis cDNA clone N11D06, mRNA sequence.