GO242427

Overview
NameGO242427
Unique NameGO242427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_MONBE (Ribosome biogenesis protein BOP1 homolog OS=Monosiga brevicollis GN=37129 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.022e-34
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHT-SSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            +GS + +LCWFDMDLS KPY++L+ H   +  V FH+ YP+FASC DD   +V HGMVY+DL QNPLIVP++I++ H  +S+G GVMDC FHP QPWL +AG+D  I+L+
Sbjct:  689 IGSYDKRLCWFDMDLSIKPYKILRYHKYALRQVCFHKKYPIFASCGDDGNVHVLHGMVYNDLGQNPLIVPVKIIKAHNQTSDGMGVMDCTFHPSQPWLFSAGSDGSIKLH 798          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_CHLRE (Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111274 PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 69/112 (61.61%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILR-GHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLYCH 333
            VGS + ++ W+D+DLS+KPY+ L+ H      VAFHRSYPLFAS +DD T  VFHGMVY+DL  NPLIVP++ILR GHT +   GV DC FHP QPW+ TAGADS I LYC+
Sbjct:  686 VGSDDKRVAWYDLDLSTKPYKALRYHSAPPRAVAFHRSYPLFASAADDGTVQVFHGMVYADLLTNPLIVPVKILRGGHTVTASEGVADCAFHPTQPWIFTAGADSKILLYCN 797          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1B_XENLA (Ribosome biogenesis protein bop1-B OS=Xenopus laevis GN=bop1-B PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.130e-33
Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    4 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            GS + KL WFDMDLS+KPY+VL+ H K +  V+FH+SYPLFAS SDD +  V HGMVY+DL QNPLIVP+++LRGH      GV+D  FHP QPW+ ++GAD  IRL+
Sbjct:  620 GSYDSKLAWFDMDLSTKPYKVLRHHKKALRAVSFHKSYPLFASGSDDASVIVCHGMVYNDLLQNPLIVPVKVLRGHAIHRDLGVLDVMFHPTQPWVFSSGADGTIRLF 727          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1A_XENLA (Ribosome biogenesis protein bop1-A OS=Xenopus laevis GN=bop1-A PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.928e-33
Identity = 65/108 (60.19%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    4 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            GS + KL WFDMDLS+KPY+VL+ H K +  V+FH+SYPLFAS SDD +  V HGMVY+DL QNPLIVP+++LRGH      GV+D  FHP QPW+ ++GAD+ IRL+
Sbjct:  620 GSYDSKLAWFDMDLSTKPYKVLRHHKKALRAVSFHKSYPLFASGSDDGSVIVCHGMVYNDLLQNPLIVPVKVLRGHAIHRDLGVLDVTFHPTQPWVFSSGADATIRLF 727          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_DICDI (Ribosome biogenesis protein BOP1 homolog OS=Dictyostelium discoideum GN=DDB_G0281839 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 63/109 (57.80%), Postives = 81/109 (74.31%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            +G  + K+CWFD+DLS +PY+VL  H   +  V +H + PLFASCSDD + +VFHGMVY DL QN LIVPL+IL+ H S N  GV+D  FHP+QPW+ ++GADS IRLY
Sbjct:  723 MGGYDKKVCWFDLDLSVRPYKVLNYHKMAVRKVIYHPTLPLFASCSDDLSIHVFHGMVYDDLLQNALIVPLKILKTHESINDLGVLDIVFHPKQPWIFSSGADSTIRLY 831          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_XENTR (Ribosome biogenesis protein bop1 OS=Xenopus tropicalis GN=bop1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33
Identity = 64/108 (59.26%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    4 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            GS + KL WFDMDLS+KPY+VL+ H K +  V++H+ YPLFAS SDD +  V HGMVY+DL QNPLIVP+++LRGH      GV+D  FHP QPW+ ++GAD+ IRLY
Sbjct:  621 GSYDSKLAWFDMDLSTKPYKVLRHHKKALRAVSYHKQYPLFASGSDDGSVIVCHGMVYNDLLQNPLIVPVKVLRGHAIHRDLGVLDVIFHPTQPWVFSSGADATIRLY 728          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_MOUSE (Ribosome biogenesis protein BOP1 OS=Mus musculus GN=Bop1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.132e-32
Identity = 63/108 (58.33%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    4 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            GS + KL WFD+DLS+KPY+VL+ H K +  VAFH  YPLFAS SDD +  V HGMVY+DL QNPL+VP+++L+GHT +   GV+D  FHP QPW+ ++GAD  IRL+
Sbjct:  624 GSYDSKLVWFDLDLSTKPYKVLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHTLTRDLGVLDVAFHPTQPWVFSSGADGTIRLF 731          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_RAT (Ribosome biogenesis protein BOP1 OS=Rattus norvegicus GN=Bop1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.203e-32
Identity = 62/108 (57.41%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    4 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            GS + KL WFD+DLS+KPY+VL+ H K +  VAFH  YPLFAS SDD +  V HGMVY+DL QNPL+VP+++L+GH+ +   GV+D  FHP QPW+ ++GAD  IRL+
Sbjct:  623 GSYDSKLVWFDLDLSTKPYKVLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHSLTRDLGVLDVAFHPTQPWVFSSGADGTIRLF 730          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_DANRE (Ribosome biogenesis protein bop1 OS=Danio rerio GN=bop1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31
Identity = 61/108 (56.48%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    4 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            GS + +L WFD+DLS+KPY+VL+ H K + +V+FH  YPL AS SDD +  V HGMVY+DL QNPLIVP+++L+GH+ ++  GV+D  FHP QPW+ ++GAD+ IRLY
Sbjct:  669 GSYDCRLAWFDLDLSTKPYKVLRHHKKALRSVSFHSHYPLLASGSDDGSVIVCHGMVYNDLLQNPLIVPVKVLKGHSITHDLGVLDVTFHPTQPWVFSSGADATIRLY 776          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_CRYNE (Ribosome biogenesis protein ERB1 OS=Cryptococcus neoformans GN=ERB1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.805e-31
Identity = 61/110 (55.45%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLYC 330
            +GS + KL WFDMDLS+KPY+ L+ H + + +VA+H + PLFAS SDD T ++FH  VY+DL QNPLIVPL+ILRGH   +G GV+D ++ P +PWL ++GAD  +RL+C
Sbjct:  720 IGSYDKKLAWFDMDLSAKPYKTLRYHNRALRSVAYHPTLPLFASASDDGTVHIFHCTVYTDLMQNPLIVPLKILRGHKVIDGIGVLDLRWVPGKPWLVSSGADGEVRLWC 829          
The following BLAST results are available for this feature:
BLAST of GO242427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
BOP1_MONBE1.022e-3457.27Ribosome biogenesis protein BOP1 homolog OS=Monosi... [more]
BOP1_CHLRE1.744e-3461.61Ribosome biogenesis protein BOP1 homolog OS=Chlamy... [more]
BOP1B_XENLA1.130e-3360.19Ribosome biogenesis protein bop1-B OS=Xenopus laev... [more]
BOP1A_XENLA1.928e-3360.19Ribosome biogenesis protein bop1-A OS=Xenopus laev... [more]
BOP1_DICDI5.610e-3357.80Ribosome biogenesis protein BOP1 homolog OS=Dictyo... [more]
BOP1_XENTR7.327e-3359.26Ribosome biogenesis protein bop1 OS=Xenopus tropic... [more]
BOP1_MOUSE2.132e-3258.33Ribosome biogenesis protein BOP1 OS=Mus musculus G... [more]
BOP1_RAT6.203e-3257.41Ribosome biogenesis protein BOP1 OS=Rattus norvegi... [more]
BOP1_DANRE1.058e-3156.48Ribosome biogenesis protein bop1 OS=Danio rerio GN... [more]
ERB1_CRYNE1.805e-3155.45Ribosome biogenesis protein ERB1 OS=Cryptococcus n... [more]

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Properties
Property NameValue
Genbank description1075 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1238 5, mRNA sequence.