GO241577

Overview
NameGO241577
Unique NameGO241577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241577_ssr19 microsatellite GO241577_ssr19:19..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13741 contig Csv1_Contig13741:1..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241577 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 5.204e-81
Identity = 127/138 (92.03%), Postives = 130/138 (94.20%), Query Frame = 3
Query:   84 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKR 497
            M  FRFHQYQVVGR LPT +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+  KLCKR
Sbjct:    1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKR 138          

HSP 2 Score: 54.6842 bits (130), Expect = 5.204e-81
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1
Query:  493 REEATKQFHNSKIKFPLVFRKVRPPSRKLRTTY 591
            + + TKQFH S IKFPLV+RKVRPP+RKL+TT+
Sbjct:  137 KRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTF 169          
BLAST of GO241577 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.658e-75
Identity = 137/149 (91.95%), Postives = 140/149 (93.96%), Query Frame = 3
Query:   84 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRGSHQAVPQFKN 530
            MVTFRFHQYQVVGR LP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKR S +   QF N
Sbjct:    1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSK---QFHN 146          
BLAST of GO241577 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 4.692e-72
Identity = 131/149 (87.92%), Postives = 136/149 (91.28%), Query Frame = 3
Query:   84 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRGSHQAVPQFKN 530
            M  FRFHQYQVVGRALPTE D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKR   ++  QF N
Sbjct:    1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKR---ESTKQFHN 146          
BLAST of GO241577 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.783e-71
Identity = 129/146 (88.36%), Postives = 133/146 (91.10%), Query Frame = 3
Query:   93 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRGSHQAVPQFKN 530
            FRFHQYQVVGRALPTE+DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKR   +   QF N
Sbjct:    4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKR---EITKQFHN 146          
BLAST of GO241577 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.095e-44
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = 3
Query:  102 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRGS 503
            H++QVVGR +PTE D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EIFE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II    I A L +R +
Sbjct:    4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRAN 137          

HSP 2 Score: 33.4982 bits (75), Expect = 5.095e-44
Identity = 16/29 (55.17%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  484 SYAREEATKQFHNSKIKFPLVFRKVRPPS 570
            S  R   TKQFH+SKIKFPL  R  +  S
Sbjct:  131 SLTRRANTKQFHDSKIKFPLTHRIAKSKS 159          
BLAST of GO241577 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.191e-43
Identity = 70/131 (53.44%), Postives = 101/131 (77.10%), Query Frame = 3
Query:  105 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKR 497
            +Y+VVGR LP+E +    +Y+M+++A + + AKS+FWYFLR+LKK KK+ G++++I +++E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+  IQIIK  +IPA   +R
Sbjct:    9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRR 139          

HSP 2 Score: 33.113 bits (74), Expect = 7.191e-43
Identity = 17/29 (58.62%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  493 REEATKQFHNSKIKFPLVFRKVRPPSRKL 579
            R    KQFH+SKIKFPLV R     +RKL
Sbjct:  138 RRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166          
BLAST of GO241577 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.925e-41
Identity = 71/132 (53.79%), Postives = 103/132 (78.03%), Query Frame = 3
Query:  102 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKR 497
            ++Y VVGR +PTE +    I++M+++ATN V AKS+FWYF+  L++VKK+NG++L+I ++FEKNP  +KNYG+WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++  I I+K  T+ A+  KR
Sbjct:   11 NEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKR 142          

HSP 2 Score: 25.7942 bits (55), Expect = 2.925e-41
Identity = 11/27 (40.74%), Postives = 17/27 (62.96%), Query Frame = 1
Query:  508 KQFHNSKIKFPLVFRKVRPPSRKLRTT 588
            K FH++KI+FPL  R  +  +  + TT
Sbjct:  146 KMFHDAKIRFPLPHRVTKRKNLSVFTT 172          
BLAST of GO241577 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.284e-41
Identity = 76/142 (53.52%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  105 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRGSHQAVPQFKN 530
            +Y+V+GR LP+ES+  P +Y+M++++ +++ AKS+FWYFLR+LKK KK+ G++++I EI EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+  IQIIK   I A  C+R     V QF N
Sbjct:    9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRR---PQVKQFHN 147          
BLAST of GO241577 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 4.009e-39
Identity = 72/126 (57.14%), Postives = 101/126 (80.16%), Query Frame = 3
Query:   99 FHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATI 476
            F +YQV+GR LPTES   PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I I+K A I
Sbjct:    4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEI 129          
BLAST of GO241577 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 5.236e-39
Identity = 75/140 (53.57%), Postives = 102/140 (72.86%), Query Frame = 3
Query:  105 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRGSHQAVPQF 524
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R    AV QF
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRR---PAVKQF 145          
The following BLAST results are available for this feature:
BLAST of GO241577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_ORYSJ5.204e-8192.0360S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
RL18A_CASSA2.658e-7591.9560S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
R18A2_ARATH4.692e-7287.9260S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH1.783e-7188.3660S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_DICDI5.095e-4456.7260S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_DROME7.191e-4353.4460S ribosomal protein L18a OS=Drosophila melanogas... [more]
RL18A_CAEEL2.925e-4153.7960S ribosomal protein L18a OS=Caenorhabditis elega... [more]
RL18A_SPOFR4.284e-4153.5260S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
RL20_YEAST4.009e-3957.1460S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL18A_HUMAN5.236e-3953.5760S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]

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Properties
Property NameValue
Genbank description225 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 341 5, mRNA sequence.