GO241356

Overview
NameGO241356
Unique NameGO241356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:568..1274. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241356 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.428e-34
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 3
Query:   30 LALSPGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXLAVCDNYYSCPESNXCCXVFEYGNSCFAWGCCPLEXXXXXXXXYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPXKPYWXHGNQ 404
            +A S GKCGIA+E SY                        CD+YY+CPESN CC +FEYG  CFAWGCCPLE        YSCCPH+YP+C++  GTCL+SK++P  V+AL+R P  P+W  G +
Sbjct:  335 IASSSGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of GO241356 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.100e-33
Identity = 61/115 (53.04%), Postives = 73/115 (63.48%), Query Frame = 3
Query:   39 SPGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXLAVCDNYYSCPESNXCCXVFEYGNSCFAWGCCPLEXXXXXXXXYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPXKP 383
            S GKCGIA+E SY                       VCDNYY+CP+S  CC ++EYG  C+AWGCCPLE        YSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT  KP
Sbjct:  330 SSGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of GO241356 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 55/123 (44.72%), Postives = 65/123 (52.85%), Query Frame = 3
Query:   39 SPGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXLAVCDNYYSCPESNXCCXVFEYGNSCFAWGCCPLEXXXXXXXXYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPXKPYWXHGNQG 407
            S G CG+A+E SY                        CD Y  C     CC + ++  SCF+WGCCPLE        YSCCPHDYPICNVR GTC MSK NPLGV+A++R   +P    GN G
Sbjct:  219 SSGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of GO241356 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = 3
Query:   36 LSPGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXLA------VCDNYYSCPESNXCCXVFEYGNSCFAWGCCPLEXXXXXXXXYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPXK 380
            ++ GKCGIAM ASY                             VCD+ +SCP  + CC  F + N C  WGCCP+E         SCCP DYP+CN RAGTC  SK++PL V+AL+RT  K
Sbjct:  342 VTTGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of GO241356 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 42/117 (35.90%), Postives = 52/117 (44.44%), Query Frame = 3
Query:   45 GKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXLAVCDNYYSCPESNXCCXVFEYGNSCFAWGCCPLEXXXXXXXXYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPXKP 383
            GKCGIAM ASY                        CD Y  CP    CC  +   N C  WGCCP+E         +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  362 GKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of GO241356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RD21A_ARATH9.428e-3448.00Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYA_ORYSJ2.100e-3353.04Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSPL_SOLLC1.722e-2744.72Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ1.668e-2242.15Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ8.019e-1735.90Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank description2 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 6 5, mRNA sequence.