EY758160

Overview
NameEY758160
Unique NameEY758160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY758160_ssr354 microsatellite EY758160_ssr354:354..365. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_SOLTU (Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.444e-82
Identity = 103/127 (81.10%), Postives = 110/127 (86.61%), Query Frame = 2
Query:  377 EVLQMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKNAYRXIE 757
            +V  MIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNP   G SFIESQVKKIS LRK+C E G+NP IEV GGVGPKNAY+ IE
Sbjct:  118 DVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIE 244          

HSP 2 Score: 115.161 bits (287), Expect = 1.444e-82
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 3
Query:   93 ESDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 272
            +SDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+T
Sbjct:   54 KSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPIT 113          

HSP 3 Score: 30.8018 bits (68), Expect = 1.444e-82
Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 1
Query:   13 NQPTSLSCTRGIIHTILHASSRVDNASK 96
            + P SL+ TR  I T+++ASSRVD  SK
Sbjct:   27 SNPNSLTFTRRRIQTVVNASSRVDKFSK 54          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_ORYSJ (Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.621e-81
Identity = 104/127 (81.89%), Postives = 112/127 (88.19%), Query Frame = 2
Query:  377 EVLQMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKNAYRXIE 757
            +V  MIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNPAT L+AI+ VLDVVDLVLIMSVNP   G SFIESQVKKI+ LR++C E GVNP IEV GGVGPKNAY+ IE
Sbjct:  112 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVDGGVGPKNAYKVIE 238          

HSP 2 Score: 117.087 bits (292), Expect = 6.621e-81
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 3
Query:   93 ESDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 272
            ++DIIVSPSILSANF+KLGEQVKAVE+AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT
Sbjct:   48 KNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 107          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_SPIOL (Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.259e-80
Identity = 103/127 (81.10%), Postives = 108/127 (85.04%), Query Frame = 2
Query:  377 EVLQMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKNAYRXIE 757
            +V  MIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVLNP T LS IE VLDVVDLVLIMSVNP   G SFIESQVKKIS LRKMC+E GVNP IEV GGV P NAY+ IE
Sbjct:  123 DVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVTPANAYKVIE 249          

HSP 2 Score: 120.553 bits (301), Expect = 3.259e-80
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 3
Query:   93 ESDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 272
            +SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT
Sbjct:   59 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 118          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_SYNY3 (Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.693e-57
Identity = 73/127 (57.48%), Postives = 92/127 (72.44%), Query Frame = 2
Query:  377 EVLQMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKNAYRXIE 757
            +V  MIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T L  +E VL V DL+LIMSVNP   G SFI   + KI  LR+MC E G++P IEV GG+ P N ++ +E
Sbjct:   66 DVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLE 192          

HSP 2 Score: 100.523 bits (249), Expect = 1.693e-57
Identity = 44/61 (72.13%), Postives = 57/61 (93.44%), Query Frame = 3
Query:   90 LESDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 272
            +  +I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T
Sbjct:    1 MSKNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT 61          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_BACSU (Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.016e-43
Identity = 64/128 (50.00%), Postives = 80/128 (62.50%), Query Frame = 2
Query:  377 EVLQMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNP-XIEVXGGVGPKNAYRXIE 757
            +V  MI EP++ +P F KAGADI+SVH E     HLHRT+  IK+ G KAGVVLNP T +  IE V D +DLVL+M+VNP   G  FI S + KI  +++M  E G     IEV GGV  + A   IE
Sbjct:   63 DVHLMIEEPDRYIPAFAKAGADILSVHAEACP--HLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPKIKEVKRMADEKGKKDLLIEVDGGVNKETAPLVIE 188          

HSP 2 Score: 84.7297 bits (208), Expect = 7.016e-43
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 3
Query:  102 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 272
            I V+PSILSA+FA LG ++K VE  G D IH+DVMDG FVPNITIGPL+V+A+RPVT
Sbjct:    2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVT 58          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_SERMA (Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.741e-35
Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  383 LQMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKN 739
            + ++V+P  R VPDF KAGA  +S H E S   H+ RT+  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNP   G SFI   + K+  +RK+  ++G +  +EV GGV   N
Sbjct:   67 VHLMVKPVDRIVPDFAKAGASYISFHPEASE--HVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTLDKLRQVRKLIDDSGRDIRLEVDGGVKVDN 184          

HSP 2 Score: 67.3958 bits (163), Expect = 7.741e-35
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 3
Query:  105 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR 263
            +++PSILSA+FA+LGE    V  AG D +H DVMD  +VPN+TIGP+V +ALR
Sbjct:    5 LIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALR 57          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_BUCAP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.775e-34
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  383 LQMIVEP-EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKN 739
            + ++V+P +  +P F +AGAD ++ H E  ST H+ RTLN IK+ G KAG+ LNPATSL+ ++ V++ +DL+L+MSVNP     SF+ +   K+  +RK    N  N  +EV GGV  +N
Sbjct:   67 VHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSFNKLREVRKKIELNSSNILLEVDGGVKLEN 184          

HSP 2 Score: 67.3958 bits (163), Expect = 3.775e-34
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 3
Query:  108 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR 263
            ++ SILSA+FA+LGE  K    AG DWIH DVMD  +VPN+T+GP+++ ALR
Sbjct:    6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALR 57          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_HAEIN (Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae GN=rpe PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.776e-34
Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = 2
Query:  383 LQMIVEPEQRV-PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKN 739
            + ++V+P  R+ PDF KAGA+ ++ H E S   H+ R+L  I+D G K+G+V NPA  LS ++ VLD VD+VL+MSVNP   G SFI + +KK+   RK+  E+G +  +EV GGV   N
Sbjct:   67 VHLMVKPVDRIIPDFAKAGANYITFHPESSE--HIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGVKVDN 184          

HSP 2 Score: 63.5438 bits (153), Expect = 3.776e-34
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 3
Query:  105 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR 263
            +++PSILSA+ A+LG+ V+ V  AG D IH DVMD  +VPN+T GP V  ALR
Sbjct:    5 LIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALR 57          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_SHIFL (Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.342e-34
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  383 LQMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKN 739
            + ++V+P  R VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNP   G SFI   + K+  +R+   E+G +  +EV GGV   N
Sbjct:   67 VHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNN 184          

HSP 2 Score: 65.855 bits (159), Expect = 8.342e-34
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  105 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR 263
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLR 57          
BLAST of EY758160 vs. ExPASy Swiss-Prot
Match: RPE_ECOLI (Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=rpe PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.342e-34
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  383 LQMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPXXCGHSFIESQVKKISXLRKMCLENGVNPXIEVXGGVGPKN 739
            + ++V+P  R VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNP   G SFI   + K+  +R+   E+G +  +EV GGV   N
Sbjct:   67 VHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNN 184          

HSP 2 Score: 65.855 bits (159), Expect = 8.342e-34
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  105 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR 263
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLR 57          
The following BLAST results are available for this feature:
BLAST of EY758160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RPE_SOLTU1.444e-8281.10Ribulose-phosphate 3-epimerase, chloroplastic (Fra... [more]
RPE_ORYSJ6.621e-8181.89Ribulose-phosphate 3-epimerase, chloroplastic OS=O... [more]
RPE_SPIOL3.259e-8081.10Ribulose-phosphate 3-epimerase, chloroplastic OS=S... [more]
RPE_SYNY31.693e-5757.48Ribulose-phosphate 3-epimerase OS=Synechocystis sp... [more]
RPE_BACSU7.016e-4350.00Ribulose-phosphate 3-epimerase OS=Bacillus subtili... [more]
RPE_SERMA7.741e-3545.00Ribulose-phosphate 3-epimerase OS=Serratia marcesc... [more]
RPE_BUCAP3.775e-3443.33Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_HAEIN3.776e-3445.83Ribulose-phosphate 3-epimerase OS=Haemophilus infl... [more]
RPE_SHIFL8.342e-3445.00Ribulose-phosphate 3-epimerase OS=Shigella flexner... [more]
RPE_ECOLI8.342e-3445.00Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-040-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY758160 ID=EY758160; Name=EY758160; organism=Citrus sinensis; type=EST; length=896bp
AAACCAATACTTAATCAGCCCACCTCACTTAGTTGTACACGGGGGATAAT
CCATACTATACTGCACGCATCATCCCGCGTGGATAATGCCTCGAAAGTGA
TATTATTGTTTCTCCATCTATTCTCTCTGCTAATTTCGCGAAGTTAGGCG
AGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTGATTGGATTCATGTTGAT
GTCATGGATGGTCGTTTTGTTCCAAACATTACAATTGGACCTCTTGTGGT
TGATGCCTTGCGCCCTGTGACAGACCTTCCTTTGGATGTTCATTTGGTGT
TGTTTCTTTTGCATAGCTTTCTCATTGATCAAGTCATTTTCAAATAAAAG
ATATGCTTGCTTGCTGACATGAAGCTGAAGTGTTGCAGATGATTGTCGAA
CCTGAACAACGAGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAG
CGTCCACTGTGAGCAATCATCCACCATTCATTTGCACCGCACTCTTAACC
AAATAAAAGATTTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGCTACC
TCACTGAGTGCAATAGAATGTGTCCTTGATGTGGTTGATCTTGTCTTGAT
CATGTCNGTGAACCCTGNCTNNTGTGGGCATAGCTTTATTGAGAGCCAAG
TNAAAAAAATCTCANACTTGAGAAAGATGTGTTTAGAGAATGGAGTNAAC
CCATGNATTGAAGTANATGGTGGAGTAGGTCCCAAAAATGCATATAGGNN
TATTGAGCTGGCGCCTATGCCCTNGTTGCTGGTTCANCTGCCTTTGGAGC
TAAAGATATGCTGAAGCTCTAAGGGGATTNATACCANCAAAAGCACAAGG
CAGTGCAGTGTGACAGATGATACAAAAAGGGATGTTAGATTCATCC
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