CN189835

Overview
NameCN189835
Unique NameCN189835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE2_ARATH (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.823e-44
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = -3 
Query:  166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423
            LILNGKAVCCM MGNFDEAE            DPETLANLVVCSLH GKS+SR+L+QLKL+HP+H+LVKR SS +++FERA+Q VA
Sbjct:  208 LILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRHLSQLKLSHPEHILVKRVSSAEDNFERAVQLVA 293

HSP 2 Score: 81.6481 bits (200), Expect = 2.823e-44
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = -2 
Query:  407 QIDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEKYPMTGFDLEWK 553
            QIDEDHTLTQLA+AWLNLAVGG KIQEAYLIF+DF EKYPMT   L  K
Sbjct:  165 QIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDFSEKYPMTCLILNGK 213
[Close]
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE1_ARATH (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.632e-28
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = -3 
Query:  166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423
            LILNGKAVCCMHMGNF+EAE            DPETLANLVVCSLH GKS+SRYLNQLKL+HP+H+LVKRA+S +++FERALQS A
Sbjct:  207 LILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRYLNQLKLSHPEHVLVKRAASAEDNFERALQSFA 292

HSP 2 Score: 86.2705 bits (212), Expect = 1.097e-16
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = -2 
Query:  392 QIDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEKYPMTGFDLEWKG-CLLH 553
            QIDEDHTLTQLA+AWLNLAVGG KIQEAYLIFQDF EKYPMT   L  K  C +H
Sbjct:  164 QIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGKAVCCMH 218
[Close]
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE1_ORYSJ (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.804e-27
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = -3 
Query:  166 GLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 426
            G++LNGKAVCCMHMG+FDEAE            DPETLANL+VC+LH GK +SRYL+QLKL+HPDH+LVKRA S +++FERALQ+VA
Sbjct:  201 GMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKPSSRYLSQLKLSHPDHVLVKRAVSAEDNFERALQAVA 287

HSP 2 Score: 86.2705 bits (212), Expect = 1.097e-16
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = -2 
Query:  392 QIDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEKYPMTGFDLEWKG-CLLH 553
            QIDEDHTLTQLANAWL++AVGG KI+EAYLIFQDF EKYPMTG  L  K  C +H
Sbjct:  159 QIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTGMVLNGKAVCCMH 213
[Close]
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSJ (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.689e-25
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = -3 
Query:  166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423
            LILNGKA+C MHMGNF++AEG           D ETLANLVVCSL+ GKS SRYLNQLKL HPDHMLVKR SS ++SF+RA Q+++
Sbjct:  212 LILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDRACQAIS 297

HSP 2 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = -2 
Query:  392 QIDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEKYPMTGFDLEWKG-CLLH 553
            Q+DEDHTLTQLANAW++L +GG KIQEA+LIFQD  EKYP T   L  K  CL+H
Sbjct:  169 QLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMH 223
[Close]
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSI (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.689e-25
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = -3 
Query:  166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423
            LILNGKA+C MHMGNF++AEG           D ETLANLVVCSL+ GKS SRYLNQLKL HPDHMLVKR SS ++SF+RA Q+++
Sbjct:  212 LILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDRACQAIS 297

HSP 2 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = -2 
Query:  392 QIDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEKYPMTGFDLEWKG-CLLH 553
            Q+DEDHTLTQLANAW++L +GG KIQEA+LIFQD  EKYP T   L  K  CL+H
Sbjct:  169 QLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMH 223
[Close]
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE_CRIGR (Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 9.736e-20
Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = -3 
Query:  175 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER-ALQ 423
            L+LNG+A C    G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R ALQ
Sbjct:  217 LLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYQAKENDFDRLALQ 303

HSP 2 Score: 56.6102 bits (135), Expect = 9.736e-20
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = -2 
Query:  440 DEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEK 547
            DED TLTQLA AW+NLAVGG K+QEAY IFQ+  +K
Sbjct:  176 DEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADK 211
[Close]
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE_MOUSE (Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3)

HSP 1 Score: 60.4622 bits (145), Expect = 1.266e-19
Identity = 34/89 (38.20%), Postives = 45/89 (50.56%), Query Frame = -3 
Query:  166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423
            L+LNG+A C    G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R     A
Sbjct:  217 LLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRAHPFIKEYQAKENDFDRLAMQYA 305

HSP 2 Score: 56.6102 bits (135), Expect = 1.266e-19
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = -2 
Query:  440 DEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEK 547
            DED TLTQLA AW+NLAVGG K+QEAY IFQ+  +K
Sbjct:  176 DEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADK 211
[Close]
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE_PONAB (Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.647e-19
Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = -3 
Query:  166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423
            L+LNG+A C M  G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R +   A
Sbjct:  217 LLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305

HSP 2 Score: 52.7582 bits (125), Expect = 1.647e-19
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = -2 
Query:  440 IDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEK 550
            +DED TLTQLA AW++LA GG K+Q+AY IFQ+  +K
Sbjct:  175 LDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADK 211
[Close]
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE_HUMAN (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3)

HSP 1 Score: 63.929 bits (154), Expect = 1.647e-19
Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = -3 
Query:  166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423
            L+LNG+A C M  G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R +   A
Sbjct:  217 LLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305

HSP 2 Score: 52.7582 bits (125), Expect = 1.647e-19
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = -2 
Query:  440 IDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEK 550
            +DED TLTQLA AW++LA GG K+Q+AY IFQ+  +K
Sbjct:  175 LDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADK 211
[Close]
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE_BOVIN (Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3)

HSP 1 Score: 63.5438 bits (153), Expect = 3.623e-19
Identity = 36/89 (40.45%), Postives = 47/89 (52.81%), Query Frame = -3 
Query:  166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423
            L+LNG+A C M  G ++ AEG            PETL NLVV S H GK    T+RYL+QLK  H  H  +K   + +  F+R +   A
Sbjct:  217 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQYA 305

HSP 2 Score: 51.9878 bits (123), Expect = 3.623e-19
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = -2 
Query:  440 DEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEK 547
            DED TLTQLA AW++LA GG K+Q+AY IFQ+  +K
Sbjct:  176 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 211
The following BLAST results are available for this feature:
BLAST of CN189835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
COPE2_ARATH2.823e-4468.60Coatomer subunit epsilon-2 OS=Arabidopsis thaliana... [more]
COPE1_ARATH1.632e-2872.09Coatomer subunit epsilon-1 OS=Arabidopsis thaliana... [more]
COPE1_ORYSJ1.804e-2766.67Coatomer subunit epsilon-1 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSJ1.689e-2566.28Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSI1.689e-2566.28Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE_CRIGR9.736e-2041.38Coatomer subunit epsilon OS=Cricetulus griseus GN=... [more]
COPE_MOUSE1.266e-1938.20Coatomer subunit epsilon OS=Mus musculus GN=Cope P... [more]
COPE_PONAB1.647e-1939.33Coatomer subunit epsilon OS=Pongo abelii GN=COPE P... [more]
COPE_HUMAN1.647e-1939.33Coatomer subunit epsilon OS=Homo sapiens GN=COPE P... [more]
COPE_BOVIN3.623e-1940.45Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002H24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189835 ID=CN189835; Name=CN189835; organism=Citrus sinensis; type=EST; length=554bp
AGTTAAATATTTAACATATAGAGACGTATCTTTATCCAAGAATTCAAAAA
GGGTAAATACCCAACTCTATGCTAACAAACACAAGTCTTTCAAATCAATC
ATATACTTCTCTTGTAGGTTACAAAAATCATTCACCTCTTGGCCCCAAAA
TGACTCTAGTTTTCAGGCAACAGATTGAAGTGCTCTTTCAAAGCTCTCAT
CTCCGGATGAAGCACGCTTGACAAGCATGTGGTCTGGGTGTGTAAGCTTC
AACTGGTTGAGGTAACGTGAAGTTGATTTTCCTTGGTGAAGACTGCATAC
AACCAGGTTGGCAAGAGTTTCTGGATCTTTATCATCCTTGTTGAGTGCAT
CAAGCAACAATCCTTCAGCTTCATCAAAGTTCCCCATATGCATGCAGCAA
ACAGCCTTTCCATTCAAGATCAAACCCTGTCATTGGATACTTCTCAAAGA
AATCTTGAAAGATGAGATATGCTTCCTGTATCTTGTAACCACCCACTGCC
AAATTCAACCAAGCATTTGCAAGTTGAGTTAGGGTGTGGTCCTCATCAAT
CTGT
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