CN189835
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE2_ARATH (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.823e-44 Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = -3 Query: 166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423 LILNGKAVCCM MGNFDEAE DPETLANLVVCSLH GKS+SR+L+QLKL+HP+H+LVKR SS +++FERA+Q VA Sbjct: 208 LILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRHLSQLKLSHPEHILVKRVSSAEDNFERAVQLVA 293 HSP 2 Score: 81.6481 bits (200), Expect = 2.823e-44 Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = -2 Query: 407 QIDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEKYPMTGFDLEWK 553 QIDEDHTLTQLA+AWLNLAVGG KIQEAYLIF+DF EKYPMT L K Sbjct: 165 QIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDFSEKYPMTCLILNGK 213
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE1_ARATH (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.632e-28 Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = -3 Query: 166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423 LILNGKAVCCMHMGNF+EAE DPETLANLVVCSLH GKS+SRYLNQLKL+HP+H+LVKRA+S +++FERALQS A Sbjct: 207 LILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRYLNQLKLSHPEHVLVKRAASAEDNFERALQSFA 292 HSP 2 Score: 86.2705 bits (212), Expect = 1.097e-16 Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = -2 Query: 392 QIDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEKYPMTGFDLEWKG-CLLH 553 QIDEDHTLTQLA+AWLNLAVGG KIQEAYLIFQDF EKYPMT L K C +H Sbjct: 164 QIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGKAVCCMH 218
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE1_ORYSJ (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.804e-27 Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = -3 Query: 166 GLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 426 G++LNGKAVCCMHMG+FDEAE DPETLANL+VC+LH GK +SRYL+QLKL+HPDH+LVKRA S +++FERALQ+VA Sbjct: 201 GMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKPSSRYLSQLKLSHPDHVLVKRAVSAEDNFERALQAVA 287 HSP 2 Score: 86.2705 bits (212), Expect = 1.097e-16 Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = -2 Query: 392 QIDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEKYPMTGFDLEWKG-CLLH 553 QIDEDHTLTQLANAWL++AVGG KI+EAYLIFQDF EKYPMTG L K C +H Sbjct: 159 QIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTGMVLNGKAVCCMH 213
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSJ (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.689e-25 Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = -3 Query: 166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423 LILNGKA+C MHMGNF++AEG D ETLANLVVCSL+ GKS SRYLNQLKL HPDHMLVKR SS ++SF+RA Q+++ Sbjct: 212 LILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDRACQAIS 297 HSP 2 Score: 75.8702 bits (185), Expect = 1.483e-13 Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = -2 Query: 392 QIDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEKYPMTGFDLEWKG-CLLH 553 Q+DEDHTLTQLANAW++L +GG KIQEA+LIFQD EKYP T L K CL+H Sbjct: 169 QLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMH 223
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSI (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 1.689e-25 Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = -3 Query: 166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423 LILNGKA+C MHMGNF++AEG D ETLANLVVCSL+ GKS SRYLNQLKL HPDHMLVKR SS ++SF+RA Q+++ Sbjct: 212 LILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDRACQAIS 297 HSP 2 Score: 75.8702 bits (185), Expect = 1.483e-13 Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = -2 Query: 392 QIDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEKYPMTGFDLEWKG-CLLH 553 Q+DEDHTLTQLANAW++L +GG KIQEA+LIFQD EKYP T L K CL+H Sbjct: 169 QLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMH 223
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE_CRIGR (Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2) HSP 1 Score: 60.8474 bits (146), Expect = 9.736e-20 Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = -3 Query: 175 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER-ALQ 423 L+LNG+A C G ++ AEG PETL NL+V S H GK T+RYL+QLK H H +K + + F+R ALQ Sbjct: 217 LLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYQAKENDFDRLALQ 303 HSP 2 Score: 56.6102 bits (135), Expect = 9.736e-20 Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = -2 Query: 440 DEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEK 547 DED TLTQLA AW+NLAVGG K+QEAY IFQ+ +K Sbjct: 176 DEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADK 211
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE_MOUSE (Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3) HSP 1 Score: 60.4622 bits (145), Expect = 1.266e-19 Identity = 34/89 (38.20%), Postives = 45/89 (50.56%), Query Frame = -3 Query: 166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423 L+LNG+A C G ++ AEG PETL NL+V S H GK T+RYL+QLK H H +K + + F+R A Sbjct: 217 LLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRAHPFIKEYQAKENDFDRLAMQYA 305 HSP 2 Score: 56.6102 bits (135), Expect = 1.266e-19 Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = -2 Query: 440 DEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEK 547 DED TLTQLA AW+NLAVGG K+QEAY IFQ+ +K Sbjct: 176 DEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADK 211
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE_PONAB (Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 1.647e-19 Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = -3 Query: 166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423 L+LNG+A C M G ++ AEG PETL NL+V S H GK T+RYL+QLK H H +K + + F+R + A Sbjct: 217 LLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305 HSP 2 Score: 52.7582 bits (125), Expect = 1.647e-19 Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = -2 Query: 440 IDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEK 550 +DED TLTQLA AW++LA GG K+Q+AY IFQ+ +K Sbjct: 175 LDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADK 211
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE_HUMAN (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3) HSP 1 Score: 63.929 bits (154), Expect = 1.647e-19 Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = -3 Query: 166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423 L+LNG+A C M G ++ AEG PETL NL+V S H GK T+RYL+QLK H H +K + + F+R + A Sbjct: 217 LLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305 HSP 2 Score: 52.7582 bits (125), Expect = 1.647e-19 Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = -2 Query: 440 IDEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEK 550 +DED TLTQLA AW++LA GG K+Q+AY IFQ+ +K Sbjct: 175 LDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADK 211
BLAST of CN189835 vs. ExPASy Swiss-Prot
Match: COPE_BOVIN (Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3) HSP 1 Score: 63.5438 bits (153), Expect = 3.623e-19 Identity = 36/89 (40.45%), Postives = 47/89 (52.81%), Query Frame = -3 Query: 166 LILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 423 L+LNG+A C M G ++ AEG PETL NLVV S H GK T+RYL+QLK H H +K + + F+R + A Sbjct: 217 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQYA 305 HSP 2 Score: 51.9878 bits (123), Expect = 3.623e-19 Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = -2 Query: 440 DEDHTLTQLANAWLNLAVGGYKIQEAYLIFQDFFEK 547 DED TLTQLA AW++LA GG K+Q+AY IFQ+ +K Sbjct: 176 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 211 The following BLAST results are available for this feature:
BLAST of CN189835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189835 ID=CN189835; Name=CN189835; organism=Citrus sinensis; type=EST; length=554bpback to top |