CN189745

Overview
NameCN189745
Unique NameCN189745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7399 contig Csv1_Contig7399:147..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189745 vs. ExPASy Swiss-Prot
Match: TIF6B_ARATH (Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 89/238 (37.39%), Postives = 129/238 (54.20%), Query Frame = 3
Query:    9 IVVKEEVNNDVCKEIGFSKGSAIQWPFSNKVSAVP-QFMSFKVAQEDKNKKILSDHLGSSG-FMPFS-AEAYEHNQRRGMAEVQKSFDLDRQGGTHISLTAYSVPHEVHSVHCSHDIKTFPVSNQ---AIPVSINNPVFKNQ-FATIGQNMGGANVKQQFLGGIPVTSPH-TVLPTIGSFGGVHESWNNIKTRGSP-QLTIFYAGTVNVFEDISPEKAQAIMLLAGNGSSIAPTMAQP 695
            I VKEE +    ++   ++G  + W FSNKVSA   QF+SF+  QED+++K  + HL  SG FMP S A+ Y+  ++   + VQ                                ++ FP SNQ      VS++ P F++  +A  G++    N   Q L G+P+ +P  ++LP  GS  G  +  ++ K  GSP QLTIFYAG+V V++DISPEKA+AIMLLAGNGSS+    + P
Sbjct:   15 ITVKEETSES-SRDSAPNRG--MNWSFSNKVSASSSQFLSFRPTQEDRHRKSGNYHLPHSGSFMPSSVADVYDSTRKAPYSSVQ-------------------------------GVRMFPNSNQHEETNAVSMSMPGFQSHHYAPGGRSFMNNNNNSQPLVGVPIMAPPISILPPPGSIVGTTDIRSSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSMPQVFSPP 218          
BLAST of CN189745 vs. ExPASy Swiss-Prot
Match: TIF6A_ARATH (Protein TIFY 6A OS=Arabidopsis thaliana GN=TIFY6A PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 77/236 (32.63%), Postives = 107/236 (45.34%), Query Frame = 3
Query:    9 IVVKEEVNNDVCKEIGFSKGSAIQWPFSNKVSAVPQFMSFKVAQEDKNKKILSDHLGSSGFMPFSAEAYEHNQRRGMAEVQKSFDLDRQGGTHISLTAYSVPHEVHSVHCSHDIKTFPVSNQ----AIPVSINNPVFKNQFATIGQNMGGANVKQQFLGGIPVTSPHTVLPTIGSFGGVHESWNNIKTRGSP---QLTIFYAGTVNVFEDISPEKAQAIMLLAGNGSSIAPTMAQP 695
            I VKEE N D     G      + W FS+KV + PQF+SF  +Q++     ++DHL SS  M       + NQR   + +Q+                                + FP S+Q     I VS++ P + N F           +  Q LGG P+ +P            V  +   I++   P   QLTIFYAG+V V++DI+PEKAQAIMLLAGNG    P ++QP
Sbjct:   15 ITVKEETNEDSAPSRGM-----MDWSFSSKVGSGPQFLSFGTSQQETRVNTVNDHLLSSAAM-------DQNQRTYFSSLQED-------------------------------RVFPGSSQQDQTTITVSMSEPNYINSF-----------INHQHLGGSPIMAPPV---------SVFPAPTTIRSSSKPLPPQLTIFYAGSVLVYQDIAPEKAQAIMLLAGNGPHAKP-VSQP 186          
The following BLAST results are available for this feature:
BLAST of CN189745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TIF6B_ARATH1.724e-2437.39Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B ... [more]
TIF6A_ARATH2.848e-1932.63Protein TIFY 6A OS=Arabidopsis thaliana GN=TIFY6A ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189745 ID=CN189745; Name=CN189745; organism=Citrus sinensis; type=EST; length=695bp
GCGTTGTTATTGTGGTGAAGGAAGAGGTCAACAATGATGTTTGCAAAGAG
ATAGGATTTAGTAAAGGGTCGGCGATTCAGTGGCCCTTCTCCAACAAGGT
CAGTGCAGTTCCTCAATTCATGTCTTTTAAGGTTGCTCAAGAAGATAAGA
ATAAGAAGATTCTATCTGATCACCTGGGGTCCTCTGGATTTATGCCTTTC
TCTGCGGAAGCATATGAGCATAATCAAAGGCGTGGAATGGCCGAAGTTCA
GAAATCATTCGATCTCGATAGGCAAGGTGGGACTCATATTTCACTGACAG
CTTATTCTGTGCCACATGAAGTGCATTCTGTGCACTGTTCTCATGATATA
AAGACATTTCCAGTCTCCAACCAGGCAATTCCGGTTTCTATCAACAACCC
TGTCTTCAAGAATCAATTTGCTACCATAGGTCAGAACATGGGTGGTGCCA
ACGTGAAGCAACAGTTTCTTGGAGGAATTCCTGTTACATCTCCACATACA
GTTCTTCCCACCATTGGATCTTTTGGTGGGGTACATGAATCATGGAACAA
TATCAAAACCCGTGGATCTCCTCAGTTGACCATCTTTTATGCCGGTACAG
TTAATGTCTTTGAAGATATCTCGCCTGAGAAGGCTCAGGCTATTATGCTA
TTAGCTGGTAATGGTTCCTCCATTGCTCCAACAATGGCGCAACCA
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