DR908804

Overview
NameDR908804
Unique NameDR908804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908804 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.061e-41
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 3
Query:    3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 251
            DRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Sbjct:    5 DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87          
BLAST of DR908804 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.061e-41
Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = 3
Query:    3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 251
            DRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Sbjct:    5 DRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87          
BLAST of DR908804 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.381e-27
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 3
Query:    3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 251
            +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY +L YFAIAENES  R  +N M++ML PCG PPE+ +D
Sbjct:    3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85          
BLAST of DR908804 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.818e-25
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 3
Query:    3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 251
            DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:    3 DRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of DR908804 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.818e-25
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 3
Query:    3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 251
            DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:    3 DRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of DR908804 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 3
Query:    3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 251
            DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML P G P ++ ++
Sbjct:    3 DRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85          
BLAST of DR908804 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.474e-22
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 3
Query:    3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 251
            +R ++NSQLEHLQ +YVGTGHAD+++ EW  N  RDS +S+IGH   L+ F+IAENES+GR  YN + KM+ PCG  P+ +D+
Sbjct:    3 ERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85          
BLAST of DR908804 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 3
Query:    3 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPP 236
            DR    ++LE LQA+YVG G+A   ++EW VN  RD+ +S +GH P+LAY A A  E   +   N ++KM++PCG PP
Sbjct:    3 DRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80          
The following BLAST results are available for this feature:
BLAST of DR908804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SF3BB_ARATH1.061e-4193.98Uncharacterized protein At4g14342 OS=Arabidopsis t... [more]
SF3BA_ARATH1.061e-4193.98Uncharacterized protein At3g23325 OS=Arabidopsis t... [more]
SF3B5_DROME7.381e-2763.86Probable splicing factor 3B subunit 5 OS=Drosophil... [more]
SF3B5_HUMAN1.818e-2560.24Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF... [more]
SF3B5_BOVIN1.818e-2560.24Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B... [more]
SF3B5_MOUSE2.625e-2459.04Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf... [more]
SF3B5_DICDI5.474e-2255.42Splicing factor 3B subunit 5 OS=Dictyostelium disc... [more]
YHV5_SCHPO1.106e-1446.15Uncharacterized protein C211.05 OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16932 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908804 ID=DR908804; Name=DR908804; organism=Citrus sinensis; type=EST; length=577bp
GTGATAGGTTTAATATAAACTCCCAGCTAGAGCATCTGCAAGCCAAATAC
GTTGGTACTGGCCATGCTGATTTGAACAGATTTGAATGGGCTGTGAACAT
TCAGCGTGATAGCTATGCCTCGTATATTGGGCATTACCCTATGTTGGCCT
ATTTTGCTATTGCCGAGAATGAATCTATTGGAAGGGAACACTATAACTTT
ATGCAGAAAATGCTTTTGCCTTGCGGCTTACCCCCTGAAAGAGAAGATGA
TTGAGAGTTTAGGATGCCCTTTCTGAGAAATGAAACATTTTGGGCTCCAG
CTCTCTCCAGGCTGAGGAGCATTTGTGATATATCTAGGTGTTCACTTCAA
GGAACAATGTTCATGTGACACTGACAAAACTGTGTAGTAGTGTGTACTGA
AATGAATGCTCGAGTGTTGTTGCAATCCTTGGAATTATATAAATTTTTAT
GTAGTTAATCAATGTGCTGATAAATTGTTTAAATTAGGGTGTGAAGGCCA
TGGATCTGAACTATGGTATCCACTGCCCTGCTTCCTTTGTGTGATGTTCT
GGTTTTAGTTTTTAGCTGTGAAAAAAA
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