CN189603

Overview
NameCN189603
Unique NameCN189603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_ARATH (Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 3.541e-73
Identity = 125/142 (88.03%), Postives = 131/142 (92.25%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI G YEAKADGFLPGGASLHSCMTPHGPDT TYEATIAR +   P K+T TMAFMFES LIPR+C WALESPF+DHDYY+CWIGL+SHFS
Sbjct:  300 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKADGFLPGGASLHSCMTPHGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFLDHDYYQCWIGLKSHFS 441          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_ORYSJ (Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.540e-68
Identity = 118/151 (78.15%), Postives = 132/151 (87.42%), Query Frame = -1
Query:  254 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEADNESD 706
            DPS+NTVLTAPTDKPGVALLDFVIFPPRWLVAE+TFRPPYYHRNCMSEFMGLI G YEAKADGFLPGGASLHSCMTPHGPDTKTYEATI+R     P +++ T+AFMFES LIPR+C WAL+SP  D DYY+CWIGL+SHFS++     S+
Sbjct:  315 DPSVNTVLTAPTDKPGVALLDFVIFPPRWLVAENTFRPPYYHRNCMSEFMGLIYGIYEAKADGFLPGGASLHSCMTPHGPDTKTYEATISRPDANEPSRLSGTLAFMFESALIPRVCQWALDSPSRDLDYYQCWIGLKSHFSHDNGGATSE 465          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_DICDI (Homogentisate 1,2-dioxygenase OS=Dictyostelium discoideum GN=hgd PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.338e-47
Identity = 94/141 (66.67%), Postives = 111/141 (78.72%), Query Frame = -1
Query:  287 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSH 706
            DPSI TVLTAPT++ GVA  DFVIFPPRWLV E+TFRPPY+HRNCMSEFMGLIRG YEAK +GFLPGG SLHSCMTPHGPD+ T+ A I   +E  P KI D  +AFMFES LI  I  +A ++ F+D DY++CW GL+ +
Sbjct:  292 DPSIFTVLTAPTNEVGVAAADFVIFPPRWLVQENTFRPPYFHRNCMSEFMGLIRGVYEAKKEGFLPGGGSLHSCMTPHGPDSDTFYAAIK--AELKPTKIPDVALAFMFESSLILGISDYAKKN-FIDDDYWKCWQGLKDN 429          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_MOUSE (Homogentisate 1,2-dioxygenase OS=Mus musculus GN=Hgd PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.392e-45
Identity = 91/144 (63.19%), Postives = 107/144 (74.31%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALES-PFMDHDYYRCWIGLRSHFS 706
            DPSI TVLTA + +PGVA+ DFVIFPPRW VA+ TFRPPYYHRNCMSEFMGLI+G YEAK  GFLPGG SLHS MTPHGPD   +E   A  ++  P +I D TMAFMFES L   +  W L++   +D +YY+CW  LRSHF+
Sbjct:  294 DPSIFTVLTAKSLRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIKGHYEAKQGGFLPGGGSLHSAMTPHGPDADCFEK--ASKAKLEPERIADGTMAFMFESSLSLAVTKWGLKTCSCLDENYYKCWEPLRSHFT 435          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PONAB (Homogentisate 1,2-dioxygenase OS=Pongo abelii GN=HGD PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.124e-45
Identity = 91/144 (63.19%), Postives = 107/144 (74.31%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALE-SPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLTA + +PGVA+ DFVIFPPRW VA+ TFRPPYYHRNCMSEFMGLIRG YEAK  GFLPGG SLHS MTPHGPD   +E   A  ++  P +I D TMAFMFES L   +  W L+ S  +D +Y++CW  L+SHF+
Sbjct:  294 DPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPDADCFEK--ASKAKLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFT 435          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_HUMAN (Homogentisate 1,2-dioxygenase OS=Homo sapiens GN=HGD PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 91/144 (63.19%), Postives = 106/144 (73.61%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALE-SPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLTA + +PGVA+ DFVIFPPRW VA+ TFRPPYYHRNCMSEFMGLIRG YEAK  GFLPGG SLHS MTPHGPD   +E   A   +  P +I D TMAFMFES L   +  W L+ S  +D +Y++CW  L+SHF+
Sbjct:  294 DPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPDADCFEK--ASKVKLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFT 435          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEF5 (Homogentisate 1,2-dioxygenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=hmgA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.025e-44
Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+PT  PG+A LDFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA+GFLPGGASLHSCM+ HGPD +T   T A  ++  P KI +TMAFMFE+  + R   +ALE P + +DY  CW  L   F+
Sbjct:  291 DPSIFTVLTSPTSVPGLANLDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAEGFLPGGASLHSCMSAHGPDGET--CTKAINAQLQPAKIDNTMAFMFETSQVLRPSQFALECPELQNDYDACWASLPVTFN 430          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEAE (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa GN=hmgA PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.511e-44
Identity = 84/142 (59.15%), Postives = 109/142 (76.76%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+PT  PG+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA GF+PGGASLHSCM+ HGPD ++ +  IA  ++  P++I  TMAFMFE+  + R    ALE+P + +DY  CW  L S F+
Sbjct:  289 DPSIFTVLTSPTSVPGLANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAGGFVPGGASLHSCMSAHGPDAESCDKAIA--ADLKPHRIDQTMAFMFETSQVLRPSRAALETPALQNDYDACWASLVSTFN 428          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_PSEA8 (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain LESB58) GN=hmgA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.511e-44
Identity = 84/142 (59.15%), Postives = 109/142 (76.76%), Query Frame = -1
Query:  281 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 706
            DPSI TVLT+PT  PG+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA GF+PGGASLHSCM+ HGPD ++ +  IA  ++  P++I  TMAFMFE+  + R    ALE+P + +DY  CW  L S F+
Sbjct:  289 DPSIFTVLTSPTSVPGLANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAGGFVPGGASLHSCMSAHGPDAESCDKAIA--ADLKPHRIDQTMAFMFETSQVLRPSRAALETPALQNDYDACWASLVSTFN 428          
BLAST of CN189603 vs. ExPASy Swiss-Prot
Match: HGD_MYXXD (Homogentisate 1,2-dioxygenase OS=Myxococcus xanthus (strain DK 1622) GN=hmgA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.695e-44
Identity = 82/138 (59.42%), Postives = 103/138 (74.64%), Query Frame = -1
Query:  293 DPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLR 706
            DPSI TVLT+P++ PG A  DFVIFPPRW+VAEHTFRPP++HRN MSEFMGL+ G Y+AKA GF PGG SLH+CM+ HGPD  +YE  I   ++  P+KI DT+AFMFES  + R   +A+E+P +  DY  CW G +
Sbjct:  297 DPSIFTVLTSPSEVPGTANCDFVIFPPRWMVAEHTFRPPWFHRNVMSEFMGLVHGVYDAKAGGFAPGGGSLHNCMSGHGPDRTSYEQAIQ--ADLKPHKIKDTLAFMFESRWVIRPTRFAMETPALQQDYDACWAGFQ 432          
The following BLAST results are available for this feature:
BLAST of CN189603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_ARATH3.541e-7388.03Homogentisate 1,2-dioxygenase OS=Arabidopsis thali... [more]
HGD_ORYSJ1.540e-6878.15Homogentisate 1,2-dioxygenase OS=Oryza sativa subs... [more]
HGD_DICDI3.338e-4766.67Homogentisate 1,2-dioxygenase OS=Dictyostelium dis... [more]
HGD_MOUSE2.392e-4563.19Homogentisate 1,2-dioxygenase OS=Mus musculus GN=H... [more]
HGD_PONAB3.124e-4563.19Homogentisate 1,2-dioxygenase OS=Pongo abelii GN=H... [more]
HGD_HUMAN6.960e-4563.19Homogentisate 1,2-dioxygenase OS=Homo sapiens GN=H... [more]
HGD_PSEF52.025e-4461.27Homogentisate 1,2-dioxygenase OS=Pseudomonas fluor... [more]
HGD_PSEAE4.511e-4459.15Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEA84.511e-4459.15Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_MYXXD7.695e-4459.42Homogentisate 1,2-dioxygenase OS=Myxococcus xanthu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189603 ID=CN189603; Name=CN189603; organism=Citrus sinensis; type=EST; length=706bp
TTTTTTTTTTTTTTTAAATTTTTTTACATCAATTATATATGTACATCCAA
GTTTTTATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCTATAT
ATAACCCAATCATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTG
TTTATAAATACTCGCCCATCAATTACCGGAGAAGCTCTCATGCCTGGGGA
CCAAATCAGGCGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTC
CCCATCGCTTTCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATC
CAATCCAGCACCGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCC
CAAGGGCAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGT
ATCAGTGATCTTGTATGGCCCAGCCTCGCTTCCACGTGCAATGGTGGCCT
CATATGTCTTCGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTC
GCACCACCTGGGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTAT
CAGACCCATAAACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGA
ATGTATGCTCTGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGC
AATGCCACACCAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGA
TGGATC
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