CN189496

Overview
NameCN189496
Unique NameCN189496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657
            I+++P+I+I   HV S   C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  208 IQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 29/64 (45.31%), Postives = 45/64 (70.31%), Query Frame = -3
Query:  466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657
            I+++P++ +   HV S   C VCKE + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  212 IQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657
            I+++P+I+I   HV S   C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  209 IQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 29/64 (45.31%), Postives = 45/64 (70.31%), Query Frame = -3
Query:  466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657
            I+++P+I+I   HV     C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  209 IQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 28/64 (43.75%), Postives = 45/64 (70.31%), Query Frame = -3
Query:  466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657
            I+++P++ +   HV S   C VCK+ + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  210 IQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 28/64 (43.75%), Postives = 45/64 (70.31%), Query Frame = -3
Query:  466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657
            I+++P++ +   HV S   C VCK+ + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  213 IQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = -3
Query:  463 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 657
            +ES+P + +      +   C VC   FE G   R++PC+H++H  CILPWL   NSCP+CR ELP
Sbjct:   60 VESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELP 124          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = -3
Query:  463 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 657
            +ES+P + +      +   C VC   FE G   R++PC+H++H  CILPWL   NSCP+CR ELP
Sbjct:   60 VESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELP 124          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = -3
Query:  436 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPXXXXXXAEE 657
            IE++ + E+ S        CAVCK+   +G   +++PC H YH DCI+PWL  RNSCPVCR +L        EE
Sbjct:  238 IEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEE 311          
BLAST of CN189496 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = -3
Query:  466 IESMPSIEILSGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 657
            I  +P  EI+      +  C+VCKE  E G + R +PCKH +HE+CIL WLK  NSCP+CR EL
Sbjct:   51 ILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYEL 114          
The following BLAST results are available for this feature:
BLAST of CN189496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RN126_XENTR7.703e-1646.88RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_MOUSE2.241e-1545.31RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
R126A_XENLA2.241e-1546.88RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
R126B_XENLA3.823e-1545.31RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN126_HUMAN6.521e-1543.75RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN8.517e-1543.75RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN181_XENTR1.230e-1344.62E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
RN181_XENLA2.098e-1344.62E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
CIP8_ARATH4.673e-1343.24E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_DROME1.041e-1250.00E3 ubiquitin-protein ligase CG7694 OS=Drosophila m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189496 ID=CN189496; Name=CN189496; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTTTCAGAGAACCATCAAACTGATTAAACTGAAAAAT
CACTTGTTTATGTATATACAAAAATCAAATAATATATAATTAAAAATATG
TGACTCCTAAGATTAAAAATCATCCCCGAATTAAATTTTCAAACAATACT
TGGACGATCAGACTGTTGAACGTGATGAGTTTGATAATGAGAAGAACGTG
AACTGTTACCCCTAAACCTCCTGAAAATGGATCCAAATCCACGAAAAACC
CTAAAAAATCCGCCAACCCTTCTTTGAGGAAAAACCCTGCTACTGCTAGT
TTGATTATCCATATTATCAGCAAACTCAATTGATAATCCTCTCTCTGCGG
CTCCGGCCACCACTCTCCGGCCCTCATATCTTCCCACTGCAAACCCACCT
CCCGGCAGCCACCATATAGACAGCGCCATCGACAATTCTTCTGCGGCTGC
GGCTGCGGCTGCTGGTAGCTCTTGCCTGCAAACCGGGCACGAGTTTCGCA
TTTTGAGCCACGGGAGAATACAATCTTCATGGTATATATGCTTGCACGGC
ATCTCTCTCGCCTCGTTTCCAAGCTCAAACGCCTCTTTACATACTGCACA
GTGACACTCTGAACTTACGTGGCCTGACAAAATCTCTATGCTTGGCATCG
ACTCGATCG
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