EY676453

Overview
NameEY676453
Unique NameEY676453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY676453_ssr248 microsatellite EY676453_ssr248:248..259. BLAST: Citrus ESTs to Prunus persica proteins V1
EY676453_ssr639 microsatellite EY676453_ssr639:639..653. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.013e-28
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 2
Query:  176 VSGQPATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            VS +PATF+EDFK  WS++H+ Q+E G+AIQLVLDQ++ CGFASK+KYLFGRV M IKL+PGDSAGTVTAFYMNS      R  L+F+FL
Sbjct:   28 VSARPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTAT-VRDELDFEFL 116          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 7.422e-27
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 2
Query:  128 AITLFVLLYCLVSCSCVSGQPATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            ++ LF  LY       V  +PA F +DF++ WSD H+ QI+GGRAIQL LD +S CGFASKK+YLFGRV M IKL+PGDSAGTVTAFYMNS      R  L+F+FL
Sbjct:   16 SLCLFAALY-----QPVMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDS-VRDELDFEFL 115          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.022e-14
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  110 MAILRNAITLFVLLYCLVSCSCVSGQPATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            M  + N   L  LL   ++ +  SG   +F E+F +TW +       GG+ + L LD+ S  GF SKK+YLFGR+ M +KLV G+SAGTVTA+Y++S+        ++F+FL
Sbjct:    1 MGRILNRTVLMTLLVVTMAGTAFSG---SFNEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSEGP--THDEIDFEFL 107          

HSP 2 Score: 22.7126 bits (47), Expect = 1.022e-14
Identity = 7/18 (38.89%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  505 KANKNREWNPWFDPA*NY 558
            K N+ +++  WFDP  N+
Sbjct:  126 KGNREQQFYLWFDPTKNF 143          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.243e-14
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  143 VLLYCLVSCSCVSGQPATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            ++L  +V  + V+    +F +DF +TW         GG+ + L LD+ S  GF SKK+YLFGR+ M +KLV G+SAGTVTA+Y++S+        ++F+FL
Sbjct:   14 LMLVGIVVSTMVATCAGSFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGP--THDEIDFEFL 112          

HSP 2 Score: 22.7126 bits (47), Expect = 2.243e-14
Identity = 7/18 (38.89%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  505 KANKNREWNPWFDPA*NY 558
            K N+ +++  WFDP  N+
Sbjct:  131 KGNREQQFYLWFDPTRNF 148          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.477e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  197 FLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            F ++++ +W+  H+  + GG  + LVLD++S  GF SKK YLFG   M +KLV GDSAG VTAFY++S + +     ++F+FL
Sbjct:   32 FWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAE--HDEIDFEFL 112          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.916e-14
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  179 SGQPATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            S   + F ++F +TW D       GG  + L LDQ S  GF SKK+YLFGR+ M +KLV G+SAGTVTA+Y++S+        ++F+FL
Sbjct:   22 SAYASNFFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGA--THDEIDFEFL 108          

HSP 2 Score: 20.7866 bits (42), Expect = 4.916e-14
Identity = 6/18 (33.33%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  505 KANKNREWNPWFDPA*NY 558
            K ++ +++  WFDP  N+
Sbjct:  127 KGDREQQFYLWFDPTKNF 144          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.229e-13
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 2
Query:  197 FLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            F +++  TW+  H+  + GGR +QL LD+ +  GF ++  YLFG   M+IKLV GDSAGTVTAFY++S++ +     ++F+FL
Sbjct:   32 FDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSE--HDEIDFEFL 112          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.229e-13
Identity = 42/112 (37.50%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  110 MAILRNAITLFVLLYCLVSCSCVSGQPATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            MA       L + L   +    V+     F E F +TW +      E G+ +   LD+ S  GF SKK+YLFG++ M +KLV G+SAGTVTA+Y++SK        ++F+FL
Sbjct:    1 MACFATKQPLLLSLLLAIGFFVVAASAGNFYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKGT--AWDEIDFEFL 110          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.229e-13
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  194 TFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            +F + F +TW        E G+ +   LD+ S  GF SKK+YLFG++ M IKLVPG+SAGTVTA+Y++SK        ++F+FL
Sbjct:   26 SFYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGE--TWDEIDFEFL 107          
BLAST of EY676453 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.818e-13
Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  110 MAILRNAITLFVLLYCLVSCSCVSGQP-----ATFLEDFKVTWSDAHLMQIEGGRAIQLVLDQNSRCGFASKKKYLFGRVIMNIKLVPGDSAGTVTAFYMNSKHRK*CRTNLNFDFL 445
            M I++  +   VL+   +   C  G P       F ++++ +W+  H+  + GG    L+LD++S  GF SKK YLFG   M ++LV GDSAG VTAFY++S + +     ++F+FL
Sbjct:    1 MGIIKGVLFSIVLINLSLVVFC--GYPRRPVDVPFWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAE--HDEIDFEFL 113          

HSP 2 Score: 20.7866 bits (42), Expect = 1.818e-13
Identity = 10/36 (27.78%), Postives = 15/36 (41.67%), Query Frame = 1
Query:  505 KANKNREWNPWFDPA*NYTL*QFFSGTIHKINFIDE 612
            K N+ +    WFDP   Y        T   + F+D+
Sbjct:  132 KGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDD 167          
The following BLAST results are available for this feature:
BLAST of EY676453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
XTH6_ARATH3.013e-2867.78Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH7.422e-2759.43Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH1.022e-1440.18Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN2.243e-1440.59Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH_TOBAC2.477e-1444.58Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH4.916e-1444.94Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT1.229e-1344.58Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH14_ARATH1.229e-1337.50Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH12_ARATH1.229e-1345.24Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC1.818e-1335.90Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-H02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676453 ID=EY676453; Name=EY676453; organism=Citrus sinensis; type=EST; length=900bp
CGGGTTCCCGGGTCCCGGGATTCCCGGGGTCGACCCACGCATCCGAATTA
AAGTTCTCTCTCCCCCTTAATAACAGATAATATTTTATTGTACAGCTTGT
TTTCCCTCTATGGCTATCCTAAGAAATGCAATAACATTATTTGTGTTGCT
TTACTGTCTTGTATCCTGCTCTTGCGTTTCAGGGCAACCGGCTACTTTTC
TTGAGGATTTTAAAGTCACATGGTCCGATGCCCATCTCATGCAAATCGAG
GGAGGGAGGGCCATCCAGCTAGTTCTAGACCAAAATTCAAGATGTGGGTT
TGCTTCCAAAAAGAAATACTTGTTCGGGCGTGTAATCATGAATATCAAGC
TCGTTCCTGGAGACTCTGCTGGAACTGTCACTGCATTTTATATGAATTCC
AAACACCGAAAATGATGCAGAACAAACTTGAATTTTGATTTCCTGGAGAA
CCCAACGGGTCAACCTGAGCCGGGTCCAAAACCAAATCCTATGCCAAATG
GAAAAAGGCAAATAAAAACAGAGAGTGGAACCCCTGGTTTGACCCTGCCT
GAAATTATACACTTTAACAATTTTTCTCAGGAACCATACACAAAATTAAC
TTCATAGATGAAAAAAGTGAACCACGAGGGTTATAAAAAAAAGAAAAGAA
AAGGCTCCAATTAATATAAAACACAAACAGATGGGGGAACACTAAAACTT
TTCTTCAAACAAAATCACAAAACATAAAAAAAAGTTTAAGAAAAAAAATG
AAAGAGAAGGAGAACTACAGTATTAAGAATGAAACAAAAAAAAATAAATG
AAATAGAGTGTTCACCGCCCTGACGATAAGAGCGCAAGCCAAATCACCGC
CAGTTGCAACAGTTGGGAATAACCACTTCTGAATCCTCCCTCACCTAATC
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