CX286963
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 1.644e-51 Identity = 90/117 (76.92%), Postives = 101/117 (86.32%), Query Frame = 3 Query: 15 KKTKKVIKNSQYSKSTKMLPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWH 365 K TKKV K+S+YS S+K P SGDGQKKWTTLVHNGVIFPPPY PHG+K+LYKGK V+LT EQEEVATMFAVM +TDY KP+FRENFWNDWR+LLGK HVIQ L+ CDF PIY+WH Sbjct: 343 KNTKKVTKDSKYSTSSKSSPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGKPVDLTIEQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYEWH 459
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_DAUCA (DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 3.931e-37 Identity = 75/123 (60.98%), Postives = 89/123 (72.36%), Query Frame = 3 Query: 6 RHRKKTKKVIKNSQYSKSTKM---LPGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWH 365 + R + +SKS K+ L +GQ LVHNGVIFPP Y PHGVKMLY+ V+LTPEQEEVATMFAVML+T+YM KPKFRENF +DWRK+LG+ H+IQNLE CDF PIY+WH Sbjct: 187 KKRPDVSASVNKVDFSKSLKVPLVLVKGRNGQP----LVHNGVIFPPLYKPHGVKMLYRENPVDLTPEQEEVATMFAVMLETEYMTKPKFRENFMSDWRKILGEKHIIQNLEDCDFTPIYEWH 305
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_DICDI (DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 2.094e-22 Identity = 44/93 (47.31%), Postives = 68/93 (73.12%), Query Frame = 3 Query: 84 DGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDFKPIY 356 D KWTTL+HNG +FPP Y+PHG+K +Y GK V LTP+QEEVAT +A L+TD+++K F++NF+ +++ LL + +++ ++ CDF I+ Sbjct: 307 DDGTKWTTLIHNGPVFPPAYVPHGIKFMYDGKVVKLTPKQEEVATFYANYLETDHVKKQAFKDNFFKEFKGLLTSEQKEIVKKMDKCDFSHIH 399
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_SCHPO (DNA topoisomerase 1 OS=Schizosaccharomyces pombe GN=top1 PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 4.367e-20 Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 3 Query: 84 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGK---NHVIQNLEGCDFKPIY 356 D +KWTTL HNGVIF PPY LP VK++Y G VNL PE EEVA +A ML+TD+ + P F++NF+ D+ K+ + NH I+ CDF ++ Sbjct: 190 DDTQKWTTLEHNGVIFAPPYEPLPKNVKLIYDGNPVNLPPEAEEVAGFYAAMLETDHAKNPVFQDNFFRDFLKVCDECNFNHNIKEFSKCDFTQMF 285
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_CANAL (DNA topoisomerase 1 OS=Candida albicans GN=TOP1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.828e-19 Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 3 Query: 81 GDGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL----GKNHVIQNLEGCDFKPIY 356 GDG KW TL HNGV+FPPPY LP VK+ Y K VNL PE EEVA + ML+TD+ + P F++NF+ND+ ++L G I+ E DF +Y Sbjct: 151 GDGYIKWQTLEHNGVMFPPPYEPLPSHVKLYYNNKPVNLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDFSKMY 248
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_CRIGR (DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.835e-18 Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 3 Query: 15 KKTKKVIKNSQYSKST--KMLPGSGDGQK-------------KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDF 344 KKTK K+ + ++S K P + QK KW L H G +F PPY LP GVK Y GK + L+P+ EEVAT FA MLD +Y K FR+NF+ DWRK + + +VI NL CDF Sbjct: 176 KKTKNKDKDKKGAESDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNVITNLSKCDF 304
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_YEAST (DNA topoisomerase 1 OS=Saccharomyces cerevisiae GN=TOP1 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18 Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 3 Query: 84 DGQKKWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLLGKNH------VIQNLEGCDFKPIYDW 362 D KW TL HNGVIFPPPY LP +K+ Y GK V+L P+ EEVA FA +L++D+ + P F++NF+ND+ ++L ++ I+ CDF ++D+ Sbjct: 140 DDTIKWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDY 240
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_RAT (DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 9.105e-18 Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 3 Query: 96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDF 344 KW L H G +F PPY LP GVK Y GK + L+P+ EEVAT FA MLD +Y K FR+NF+ DWRK + + + I NL CDF Sbjct: 218 KWKFLEHKGPVFAPPYEPLPEGVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDF 304
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_HUMAN (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17 Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 3 Query: 96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDF 344 KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR+NF+ DWRK + + ++I NL CDF Sbjct: 216 KWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDF 302
BLAST of CX286963 vs. ExPASy Swiss-Prot
Match: TOP1_CERAE (DNA topoisomerase 1 OS=Cercopithecus aethiops GN=TOP1 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.460e-17 Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 3 Query: 96 KWTTLVHNGVIFPPPY--LPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYMQKPKFRENFWNDWRKLL--GKNHVIQNLEGCDF 344 KW L H G +F PPY LP VK Y GK + L+P+ EEVAT FA MLD +Y K FR+NF+ DWRK + + ++I NL CDF Sbjct: 218 KWKFLEHKGPVFAPPYEPLPDSVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDF 304 The following BLAST results are available for this feature:
BLAST of CX286963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CX286963 ID=CX286963; Name=CX286963; organism=Citrus clementina; type=EST; length=436bpback to top |