CX287211

Overview
NameCX287211
Unique NameCX287211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig808 contig Ccv1_Contig808:33..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287211 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.202e-51
Identity = 109/170 (64.12%), Postives = 125/170 (73.53%), Query Frame = 3
Query:   39 NSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 536
            NSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                       GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct:    5 NSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA-GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          
BLAST of CX287211 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.189e-40
Identity = 72/84 (85.71%), Postives = 82/84 (97.62%), Query Frame = 3
Query:  285 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 536
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of CX287211 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.352e-39
Identity = 72/84 (85.71%), Postives = 80/84 (95.24%), Query Frame = 3
Query:  285 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 536
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of CX287211 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.433e-20
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 3
Query:  282 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGS 518
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC+GKD   CGS
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of CX287211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH1.202e-5164.12Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE6.189e-4085.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU2.352e-3985.71Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA1.433e-2058.23Photosystem I reaction center subunit N, chloropla... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01005H11SK Veg1 Citrus clementina cDNA clone C01005H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287211 ID=CX287211; Name=CX287211; organism=Citrus clementina; type=EST; length=677bp
AAAAAATTTGCGCTGCAGCAGGAGCGATGGCAGCCATGAACTCTAGTGTA
CTCGCATGCAACTATGCCATTTCAGGCAGTGCTGGATCATCTGAGCTCAA
TGCAAAGATTGTTTCGGTTTCAACCCCGGCTGTGCATGGCCACAAAATGC
CTGTGATCAGAGCTCAACAAGTTGATGTTTCAAAAGAATCAAGAGGAACT
GATGGAAGGAGAGCTGCCATGGCTCTTCTAGCAGTTACCCTTTTCACCAC
AGCTACTGCTGCTGCTTCTTCTGCTAATGCTGGGGTCATCGATGAATACC
TTGAGAGAAGCAAAGCCAACAAGGAATTGAATGACCAGAAGAGATTGGCA
ACAAGTGGTGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGCACATG
CAAGTTCCCTGAGAACTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAGA
AAGTGCCATTCATCTCGGATGATTTGGAATTGGAGTGCAAAGGGAAAGAT
AAATACAAGTGTGGTTCCAATGTTTTCTGGAAATGGTGAAGTGGGACAAC
TGATCTCTTTAAACATTNTATTTTACCCTCCCATGTATCTAAGTTTCCAT
TGAAGAAGCTTTACTTGTGCTTATTTGTGTGTTATATTTTTCTGCTCAGT
ATCTTTTTATAAAAAAAAAAAAAAAAA
back to top