CX287346

Overview
NameCX287346
Unique NameCX287346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14840 contig Ccv1_Contig14840:90..531. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.775e-46
Identity = 87/131 (66.41%), Postives = 106/131 (80.92%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            MDEEYDVIVLGTGL EC+LSGLLSVDG KVLH+DRNDYYG +S+SLNL QL+  FR  EQ P  LG  RD+ VD++PKF++ANG L  +LI+TDVT+Y+ FK + GS+VY  G++ KVP  +MEALKSPLM
Sbjct:    1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFRPGEQRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVPGNEMEALKSPLM 131          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.006e-45
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.006e-45
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.006e-45
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 4.006e-45
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.006e-45
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 4.006e-45
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 5.233e-45
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.834e-45
Identity = 87/132 (65.91%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSF+Y  GK++KVP+T+ EAL S LM
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVPSTETEALASNLM 132          
BLAST of CX287346 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 9.868e-44
Identity = 83/132 (62.88%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   48 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM 440
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+  ++ L+KRF+   QPPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY  GK++KVP+T+ EAL S LM
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLM 132          
The following BLAST results are available for this feature:
BLAST of CX287346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GDI1_SCHPO2.775e-4666.41Probable secretory pathway GDP dissociation inhibi... [more]
GDIA_RAT4.006e-4566.67Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_PONPY4.006e-4566.67Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR4.006e-4566.67Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MOUSE4.006e-4566.67Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_MACFA4.006e-4566.67Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN4.006e-4566.67Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIA_BOVIN5.233e-4566.67Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_CANFA6.834e-4565.91Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIB_RAT9.868e-4462.88Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC01008E08SK Veg1 Citrus clementina cDNA clone C01008E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287346 ID=CX287346; Name=CX287346; organism=Citrus clementina; type=EST; length=442bp
AAAACCCTCTGAATCAGAAATCAAAAATCAAAAATCAAATCATCAACATG
GATGAAGAGTATGATGTCATCGTCTTGGGAACCGGTCTCAAGGAATGCAT
CCTCAGTGGTCTCCTCTCTGTTGATGGCCTCAAGGTCCTGCACATGGACA
GGAATGATTATTATGGAGGAGAGTCATCATCGCTCAATCTCATTCAGCTC
TGGAAGAGATTTAGGGGAAATGAACAACCTCCTGCTCACTTGGGCTCTAG
TAGGGATTATAATGTTGACATGATCCCGAAGTTTATAATTGCAAATGGAG
CTCTTGTTCGTGTCCTCATTCATACTGATGTTACAAAGTATCTGTACTTC
AAAGCTGTGGATGGCAGCTTCGTCTATAATAAAGGAAAGGTCCACAAGGT
GCCAGCAACTGATATGGAAGCGCTCAAATCTCCACTCATGGG
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