CX287359
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 5.524e-15 Identity = 36/59 (61.02%), Postives = 50/59 (84.75%), Query Frame = 1 Query: 1 NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 177 +FGD+ +AKVI +RE+G+SRGFGFV ++ +A++A S MDG+ELNGR+IRV+ ANDRP Sbjct: 57 HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.504e-12 Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1 Query: 7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 180 G + EA+VI +R+SG+S+GFGFVTYDS++ +A ++DG +L+GR IRVS A RPP Sbjct: 228 GKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.566e-12 Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1 Query: 7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 180 G + +AKV+ +R+SG+SRGFGFVTY S E ++A ++DG +LNGR IRVS A RPP Sbjct: 212 GKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.566e-12 Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1 Query: 7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 180 G + +AKV+ +R+SG+SRGFGFVTY S E ++A ++DG +LNGR IRVS A RPP Sbjct: 218 GKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.377e-12 Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 1 Query: 4 FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 174 +GD+ ++K+IT+RE+G+SRGFGFVT+ S+E+ A AM+GQ+L+GRNI V+ A R Sbjct: 29 YGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.716e-12 Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 Query: 4 FGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 174 FGDIT++K+I +RE+G+SRGFGFVT+ +S A M+GQEL+GRNI V+ A R Sbjct: 29 FGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 7.466e-12 Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1 Query: 1 NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 177 +F +TEA+V+T + +G+SRG+GFV + S +SA+SA SAM+GQELNG NI V+ A D P Sbjct: 53 SFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12 Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1 Query: 1 NFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 174 NFG + ++KVIT+RE+G+SRGFGFVT+ S +S A M+G+EL+GRNI V+ A R Sbjct: 30 NFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.172e-11 Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 180 G + EA+V+ +RE+G+SRGFGFVT + + A SA+DGQ L GR IRV+ A +RPP Sbjct: 268 GKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325
BLAST of CX287359 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.172e-11 Identity = 29/57 (50.88%), Postives = 46/57 (80.70%), Query Frame = 1 Query: 7 GDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 177 G++ +AKV+ +R+SG+SRGFGFVTY S++ + A +++G +L+GR+IRVS A +RP Sbjct: 231 GNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287 The following BLAST results are available for this feature:
BLAST of CX287359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287359 ID=CX287359; Name=CX287359; organism=Citrus clementina; type=EST; length=434bpback to top |