CX287595

Overview
NameCX287595
Unique NameCX287595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:157..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX287595 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 7.568e-56
Identity = 106/133 (79.70%), Postives = 114/133 (85.71%), Query Frame = 2 
Query:   41 MAVPXXXXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 439
            MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYCAEIAHNVSTKKRK IVERA+QLDVVVTN+LARLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133
[Close]
BLAST of CX287595 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.905e-55
Identity = 103/133 (77.44%), Postives = 113/133 (84.96%), Query Frame = 2 
Query:   41 MAVPXXXXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 439
            MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKF+VHN +ELELLMMHNRTYCAEIAHN+STKKRK IVERA+QLDVVV+NKL RLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133
[Close]
BLAST of CX287595 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.138e-42
Identity = 80/114 (70.18%), Postives = 99/114 (86.84%), Query Frame = 2 
Query:   98 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 439
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CX287595 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.138e-42
Identity = 80/114 (70.18%), Postives = 99/114 (86.84%), Query Frame = 2 
Query:   98 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 439
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CX287595 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.138e-42
Identity = 80/114 (70.18%), Postives = 99/114 (86.84%), Query Frame = 2 
Query:   98 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 439
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CX287595 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.138e-42
Identity = 80/114 (70.18%), Postives = 99/114 (86.84%), Query Frame = 2 
Query:   98 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 439
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CX287595 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.138e-42
Identity = 80/114 (70.18%), Postives = 99/114 (86.84%), Query Frame = 2 
Query:   98 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 439
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CX287595 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.792e-42
Identity = 83/114 (72.81%), Postives = 94/114 (82.46%), Query Frame = 2 
Query:   98 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 439
            R QSDR   +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LPNGF+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN  ARLRSQE E
Sbjct:   21 RHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134
[Close]
BLAST of CX287595 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.792e-42
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 2 
Query:   98 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 439
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + +TN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135
[Close]
BLAST of CX287595 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.087e-41
Identity = 79/114 (69.30%), Postives = 97/114 (85.09%), Query Frame = 2 
Query:   98 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 439
            R QSDR + ++ NWR+P+GID+RVR  FKG +LMPNIGYGS+KKT+H LP+GFKKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135
The following BLAST results are available for this feature:
BLAST of CX287595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL321_ARATH7.568e-5679.7060S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH4.905e-5577.4460S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_RAT2.138e-4270.1860S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG2.138e-4270.1860S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE2.138e-4270.1860S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA2.138e-4270.1860S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN2.138e-4270.1860S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_SPOFR2.792e-4272.8160S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_BOVIN2.792e-4269.3060S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_ICTPU3.087e-4169.3060S ribosomal protein L32 OS=Ictalurus punctatus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01011C06SK Veg1 Citrus clementina cDNA clone C01011C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287595 ID=CX287595; Name=CX287595; organism=Citrus clementina; type=EST; length=575bp
ACAAGGGTTTGCAGAAGCCGCGGCTCATCGTTTCAGAAAAATGGCTGTTC
CTTTGCTGACCAAGAAGATAGTGAAGAAGCGTCTCAAGAAGTTCAAGAGG
CCCCAGAGTGACAGGAAGATATCAGTGAAGGAAAATTGGCGAAGGCCGAA
GGGTATTGATTCACGTGTCAGGAGAAAGTTCAAAGGATGTGTTCTGATGC
CCAATATTGGCTACGGCTCGGACAAGAAAACACGCCACTATCTGCCCAAT
GGATTCAAGAAGTTTGTTGTGCACAATGTCAATGAACTGGAACTCTTGAT
GATGCACAACAGGACTTATTGTGCTGAGATAGCCCACAATGTATCAACCA
AGAAGAGAAAGGAGATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTC
ACCAACAAATTGGCCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGT
TTCTATATTTTGTGTTAGTGTTTGCTTTTGGCCAAATGTTTCCTAGGTTG
TCTTTGGAATGGATGAACATTTCCAGGGTTGAATTATGATGTATTTTCTA
TTTTGTCACCTGAATGATATTTTGA
back to top