CX288000

Overview
NameCX288000
Unique NameCX288000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_ARATH (Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.322e-45
Identity = 88/146 (60.27%), Postives = 112/146 (76.71%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 668
            EVDP LNLVKGRGG+LLREKM+E ASK FVV+ D+SK+V  +GGSKLA+PVE+V FCWKF   +L+ L    GCEA LR GE GK ++TDN NYI+D++ E  + D  +    I +L GVVEHG+FLDMA+ VIIAG+ GV++K+K
Sbjct:  119 EVDPFLNLVKGRGGSLLREKMIEGASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_SYNJA (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 67/137 (48.91%), Postives = 90/137 (65.69%), Query Frame = 3
Query:  246 LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            LNL+KG GGALLREK+VEA++   +++AD SK V+ L G++  +PVEVV+F WK  L R++     LGC+A LR    G PY+TD  +YI+D  F  PI +      ++    GVVEHGLF+ MAT  IIAG  G+E
Sbjct:   95 LNLIKGAGGALLREKLVEASAAELIIIADASKKVAHL-GTRFPVPVEVVRFGWKTTLARVE----ALGCQAVLRRTAEGDPYLTDEQHYILDCQF-GPIANPAKLAEQLKGTVGVVEHGLFIGMATEAIIAGPEGIE 225          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BACSK (Ribose-5-phosphate isomerase A OS=Bacillus clausii (strain KSM-K16) GN=rpiA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.062e-26
Identity = 76/163 (46.63%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  171 GMHLLDKRSTRALPVALM-IHEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            G+H++D  +   L VA     E+ P L L+KG GG+LLREK+V AA+K  VV+ADESKLV  LG  KL  PVE++ F W+   +R++     LG  A LR  + GK P+++DN N+I+D  F   I+D  S   ++ KL GVVE GLFLDMA   I+A K G+
Sbjct:   64 GIHIIDFPTMEKLEVAFDGADEIAPGLMLLKGGGGSLLREKLVAAAAKRLVVLADESKLVEELGAFKL--PVEIIPFGWETTAMRIE----ALGGVASLR--QTGKSPFVSDNHNWILDCDFGN-IRDPYSLHEKVKKLVGVVETGLFLDMACEAIVASKNGI 217          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BACWK (Ribose-5-phosphate isomerase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpiA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.163e-25
Identity = 64/142 (45.07%), Postives = 90/142 (63.38%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            E++ +L L+KG GGALLREK+V  +SK  +++ADESKLVS LG     +P+E++ F WK    R+Q     LGCE  LR  ++ +P+ITDN N IID  F   I +     TE+  + GVVE GLF++M +  II  K G++
Sbjct:   85 EINNDLQLIKGGGGALLREKIVATSSKELIIIADESKLVSHLG--TFPLPIEIISFSWKQTEKRIQ----SLGCETHLRM-KDSRPFITDNGNLIIDCIFPNKILNPNDTHTELKMITGVVETGLFINMKSKAIIGTKNGIK 219          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BACCR (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpiA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 62/142 (43.66%), Postives = 90/142 (63.38%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            E+D  L L+KG GGALLREK+V ++SK  +++ADESKLV+ LG     +P+E++ F WK    + ++  + LGC+  LR  +N + YITDN N IID  F   I + V   T++  + GVVE GLF+ M +  II  K G++
Sbjct:   84 EIDSNLQLIKGGGGALLREKIVASSSKKLIIIADESKLVTHLG--TFPLPIEIIPFSWK----QTENKIQSLGCQTTLRL-KNNETYITDNNNMIIDCIFPNHISNPVHLHTQLKMITGVVETGLFISMTSTAIIGTKNGIK 218          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_DESAA (Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 65/141 (46.10%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            EVDP+LNL+KG GGALLREK+V  A+K  +++ DESK+   L G+  A+PVEVV F        L+     LG +  +RE + GK + TDN N I+D  F  P+ D V  G  + +  GVVEHGLFL     VI+AG  G+
Sbjct:   90 EVDPDLNLIKGGGGALLREKVVAQATKKNIIIVDESKISDKL-GTIFALPVEVVPFATASETRFLE----SLGAKVTVRENQLGKAFKTDNHNRILDADF-GPMDDAVKIGMALSQRAGVVEHGLFLGTTALVIVAGADGI 224          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPT (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 64/143 (44.76%), Postives = 88/143 (61.54%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            EVD  L+L+KG GGALLREK+V AAS   +V+ADESKLV  LG  +  +P+EV+ F        LQ+ F   GC  E KLR G++G  ++TD  ++I+D      I D       +  + GVVEHGLF+ MA+ V++AG  G+
Sbjct:   87 EVDHHLDLIKGGGGALLREKIVAAASDRMIVIADESKLVDTLG--RFPLPIEVIPFGLGATRRALQNAFTAAGCDGELKLRPGKDGHAFVTDGGHWILDAQLGR-IPDAPRLAQLLSVIPGVVEHGLFVGMASTVVLAGADGI 226          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPA (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris GN=rpiA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 64/143 (44.76%), Postives = 88/143 (61.54%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 653
            EVD  L+L+KG GGALLREK+V AAS   +V+ADESKLV  LG  +  +P+EV+ F        LQ+ F   GC  E KLR G++G  ++TD  ++I+D      I D       +  + GVVEHGLF+ MA+ V++AG  G+
Sbjct:   87 EVDHHLDLIKGGGGALLREKIVAAASDRMIVIADESKLVDTLG--RFPLPIEVIPFGLGATRRALQNAFTAAGCDGELKLRPGKDGHAFVTDGGHWILDAQLGR-IPDAPRLAQLLSVIPGVVEHGLFVGMASTVVLAGADGI 226          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_BACC1 (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 10987) GN=rpiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.422e-23
Identity = 60/142 (42.25%), Postives = 89/142 (62.68%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 656
            E+D  L+L+KG GGALLREK+V ++SK  +++ADESKLV+ LG     +PVE++ F WK    + +   + LGC+  LR  +N + +ITDN N IID  F   I +  +    +  + GVVE GLF++M +  II  K G++
Sbjct:   84 EIDSNLHLIKGGGGALLREKIVASSSKELLIIADESKLVTHLG--TFPLPVEIIPFSWK----QTESKIQSLGCQTTLRL-KNNETFITDNNNMIIDCVFPHNITNPANLHNHLKMITGVVETGLFVNMTSKAIIGTKNGIQ 218          
BLAST of CX288000 vs. ExPASy Swiss-Prot
Match: RPIA_STRTD (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpiA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 67/143 (46.85%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  231 EVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 659
            EVDP+LN +KG GGALL EK+V   +K ++ V DESK+V  LG  KL  PVEVVQ    +   RL   F   G +   R  E G  ++TD  N+IIDL     I + V+ G E+  + GVVEHGLF  M   VI+AGK GV++
Sbjct:   86 EVDPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLGAFKL--PVEVVQ----YGADRLYLDFESKGYKPSFRVTEQGDRFVTDMKNFIIDLDL-GKINNPVALGDELKAMTGVVEHGLFNGMVNKVIVAGKDGVKI 221          
The following BLAST results are available for this feature:
BLAST of CX288000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 350
Match NameE-valueIdentityDescription
RPIA_ARATH1.322e-4560.27Probable ribose-5-phosphate isomerase OS=Arabidops... [more]
RPIA_SYNJA1.243e-2748.91Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_BACSK3.062e-2646.63Ribose-5-phosphate isomerase A OS=Bacillus clausii... [more]
RPIA_BACWK1.163e-2545.07Ribose-5-phosphate isomerase A OS=Bacillus weihens... [more]
RPIA_BACCR1.519e-2543.66Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_DESAA3.743e-2446.10Ribose-5-phosphate isomerase A OS=Desulfatibacillu... [more]
RPIA_RHOPT8.338e-2444.76Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_RHOPA8.338e-2444.76Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_BACC11.422e-2342.25Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_STRTD4.138e-2346.85Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]

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Properties
Property NameValue
Genbank descriptionC01015F12SK Veg1 Citrus clementina cDNA clone C01015F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288000 ID=CX288000; Name=CX288000; organism=Citrus clementina; type=EST; length=687bp
ATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACTAATT
CAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGA
TGGTATTTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCA
CCAAACCCCGACTTCTGGAAGGGATGCATTTATTAGATAAAAGGTCGACG
CGGGCTCTGCCCGTTGCTCTGATGATTCATGAGGTTGACCCAGAATTGAA
CCTCGTTAAAGGCCGAGGCGGGGCGCTTTTGAGAGAGAAGATGGTGGAAG
CTGCGTCGAAAAGCTTCGTTGTTGTGGCTGATGAGAGTAAATTAGTGAGC
GGACTCGGTGGGAGTAAGCTTGCGATGCCAGTTGAAGTGGTTCAGTTTTG
CTGGAAATTCAATTTGGTTAGGCTTCAAGACTTGTTCAGGGAACTGGGTT
GTGAGGCCAAGCTTAGAGAAGGGGAAAACGGGAAGCCTTATATTACTGAT
AATTTTAACTACATTATTGATTTATATTTCGAGACGCCCATTAAAGACGG
GGTTTCAGCTGGGACGGAGATTGGGAAGCTCGAAGGAGTTGTGGAACACG
GGTTGTTTTTGGATATGGCGACTGCTGTGATCATAGCTGGGAAGACTGGT
GTTGAAGTTAAGAGCAAGTGATGATGGCGGTGAGGAT
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