CX288001

Overview
NameCX288001
Unique NameCX288001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288001 vs. ExPASy Swiss-Prot
Match: AB2F_ARATH (ABC transporter F family member 2 OS=Arabidopsis thaliana GN=ABCF2 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.733e-28
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 2
Query:    2 VLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 202
            VLDEPTNHLDIPSKEMLEEAI+EYKGTVITVSHDRYF+KQIVNRV+EV+   L DYAGDYNY+LEKN
Sbjct:  552 VLDEPTNHLDIPSKEMLEEAINEYKGTVITVSHDRYFIKQIVNRVIEVRDGGLMDYAGDYNYFLEKN 618          
BLAST of CX288001 vs. ExPASy Swiss-Prot
Match: AB5F_ARATH (ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.771e-27
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 2
Query:    2 VLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 202
            VLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIVNRV+EV+   L+DYAGDYNYYLEKN
Sbjct:  566 VLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIVNRVIEVEDGCLEDYAGDYNYYLEKN 632          
BLAST of CX288001 vs. ExPASy Swiss-Prot
Match: YDIF_BACSU (Uncharacterized ABC transporter ATP-binding protein ydiF OS=Bacillus subtilis GN=ydiF PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 2
Query:    2 VLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 199
            +LDEPTNHLD+ SKE+LE A+ +Y GT++ VSHDRYF+ +I  RV+E+  S++++Y GDY+YY EK
Sbjct:  467 ILDEPTNHLDLDSKEVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEK 532          

HSP 2 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 2
Query:    2 VLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 199
            +LDEPTNHLDI +   LE  +  Y G ++ VSHDRYF+ ++VN+V EV  +  + Y G+Y+ YL++
Sbjct:  185 ILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESKKYHGNYSAYLDQ 250          
BLAST of CX288001 vs. ExPASy Swiss-Prot
Match: YFMR_BACSU (Uncharacterized ABC transporter ATP-binding protein yfmR OS=Bacillus subtilis GN=yfmR PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 VLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 199
            +LDEPTNHLD  + E LE  +S+Y G V+ V+HDRYF+ ++ NR+ E++  +L  Y G+Y  +LEK
Sbjct:  181 ILDEPTNHLDNETIEWLEGYLSQYPGAVMLVTHDRYFLNRVTNRIYELERGSLYTYKGNYEVFLEK 246          
BLAST of CX288001 vs. ExPASy Swiss-Prot
Match: EXPZ_BACSU (Nucleotide-binding protein expZ OS=Bacillus subtilis GN=expZ PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 2
Query:    2 VLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD 178
            +LDEPTNHLD+PS+E LEE +S+Y GT++ VSHDRYF+++  N  + +  + ++    D
Sbjct:  429 ILDEPTNHLDLPSREQLEETLSQYSGTLLAVSHDRYFLEKTTNSKLVISNNGIEKQLND 487          
BLAST of CX288001 vs. ExPASy Swiss-Prot
Match: YBIT_ECOLI (Uncharacterized ABC transporter ATP-binding protein ybiT OS=Escherichia coli (strain K12) GN=ybiT PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    2 VLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 193
            ++DEPTNHLD+ S E L  A+  Y+GT+I VSHDR FV  +  R++E+    + D++G+Y  YL
Sbjct:  461 IMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYL 524          
BLAST of CX288001 vs. ExPASy Swiss-Prot
Match: YBIT_ECOL6 (Uncharacterized ABC transporter ATP-binding protein ybiT OS=Escherichia coli O6 GN=ybiT PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    2 VLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 193
            ++DEPTNHLD+ S E L  A+  Y+GT+I VSHDR FV  +  R++E+    + D++G+Y  YL
Sbjct:  461 IMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYL 524          
BLAST of CX288001 vs. ExPASy Swiss-Prot
Match: YBIT_ECO57 (Uncharacterized ABC transporter ATP-binding protein ybiT OS=Escherichia coli O157:H7 GN=ybiT PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    2 VLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 193
            ++DEPTNHLD+ S E L  A+  Y+GT+I VSHDR FV  +  R++E+    + D++G+Y  YL
Sbjct:  461 IMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYL 524          
The following BLAST results are available for this feature:
BLAST of CX288001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AB2F_ARATH2.733e-2886.57ABC transporter F family member 2 OS=Arabidopsis t... [more]
AB5F_ARATH1.771e-2785.07ABC transporter F family member 5 OS=Arabidopsis t... [more]
YDIF_BACSU3.348e-1857.58Uncharacterized ABC transporter ATP-binding protei... [more]
YFMR_BACSU9.436e-1348.48Uncharacterized ABC transporter ATP-binding protei... [more]
EXPZ_BACSU7.988e-1247.46Nucleotide-binding protein expZ OS=Bacillus subtil... [more]
YBIT_ECOLI5.178e-1146.88Uncharacterized ABC transporter ATP-binding protei... [more]
YBIT_ECOL65.178e-1146.88Uncharacterized ABC transporter ATP-binding protei... [more]
YBIT_ECO575.178e-1146.88Uncharacterized ABC transporter ATP-binding protei... [more]
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Properties
Property NameValue
Genbank descriptionC01015G01SK Veg1 Citrus clementina cDNA clone C01015G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288001 ID=CX288001; Name=CX288001; organism=Citrus clementina; type=EST; length=721bp
GGTTTTGGATGAACCAACTAATCACTTGGATATTCCTTCAAAAGAGATGC
TCGAGGAGGCCATATCAGAGTACAAGGGCACAGTAATCACAGTTTCTCAT
GACCGATACTTCGTAAAGCAAATAGTTAATAGAGTAGTGGAGGTTAAAGG
CAGCAATTTACAGGACTATGCTGGTGATTACAATTATTACCTAGAGAAAA
ACCTCGATGCTCGGGAAAAGGAGCTTGAACGTGAGGCAGAGCTCGAAGAA
AGGGCTCCAAAAATCAAGGCCAAATCCAAGATGTCAAAGGCTGAGAAGGA
AGCTCGGAAGAAACAGAAAATGCAGGCCTTCCAGGCAGCGAAACAAAAAT
CAAAAGGCTCGAAGAATGCAAAGAGATGGAAATGAGAGATAAACCCAGTA
TATTATGCGGAAGATAATCCATTGTAACTTAATTTTGCTGAGCAAATTTC
CAGGAAGCAGTATGGGCAATGGTGAGTCTGCAAACTAGGGGGTCTGCTGT
ATAGGCATACTGATTGTAGTTAAGGGCTGAAATGGAAAAATCTTTTGGCA
GANATTTGTGATTTTTTGCTTCCCTGGCAATTTCTGCCTCAAGAGAGTCG
AGAAGCTGTAATTTATGGCATANACGTTATGCAAACAGCATTTTAGGGCC
ATTTTTAGATCTGCTTATTCCTGAATAAAGTGGAATCTTACTGTCAAAAA
AAAAAGGGGGGGCCCGGTACC
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