CX288075

Overview
NameCX288075
Unique NameCX288075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig96 contig Ccv1_Contig96:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_ARATH (DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1 SV=2)

HSP 1 Score: 345.51 bits (885), Expect = 1.807e-97
Identity = 170/205 (82.93%), Postives = 189/205 (92.20%), Query Frame = 2
Query:   32 NQDGHCLGLNSSTEAQATTSQNAITRKAGGRKEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVGVPSEDGIVENDVRAENY 646
            +QDG C+G NSSTE  A+++QN++TRKAGGRKE+EKE QVIVDMREFMSSLPNVLHQ+GM+IIPV LEVGDYILSP +CVERKSIQDLF SFTSGRL+HQVE M RYYRIPVLLIEFSQDKSFSFQS+SDI DDVTP NIISKLSLLVLHFPRLR++WSRSLHATAEIF  LK+NQDEPDE  AIRVGVPSE+GI+END+RAENY
Sbjct:  687 DQDGLCMGSNSSTEFPASSTQNSLTRKAGGRKELEKETQVIVDMREFMSSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQSFTSGRLFHQVEMMSRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLHFPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENY 891          

HSP 2 Score: 32.3426 bits (72), Expect = 1.807e-97
Identity = 14/17 (82.35%), Postives = 17/17 (100.00%), Query Frame = 1
Query:  646 HTSAVEFLRRLPGVTDS 696
            +TSAVEFLRRLPGV+D+
Sbjct:  892 NTSAVEFLRRLPGVSDA 908          
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_HUMAN (DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.906e-46
Identity = 93/176 (52.84%), Postives = 123/176 (69.89%), Query Frame = 2
Query:   80 ATTSQNAITRKAGGRKEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVGVPSE 607
            A+   +  TRKAGG+++   +  ++VDMREF S LP+++H+RG+ I PV LEVGDYIL+P MCVERKSI DL  S  +GRLY Q  +M RYY+ PVLLIEF   K FS  S   +  +++ N+I SKL+LL LHFPRLRI+W  S HATAE+F  LK ++ +PD A A+ +   SE
Sbjct:  661 ASADVSTDTRKAGGQEQNGTQQSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQCISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEISSNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSE 836          
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_CRIGR (DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 7.158e-45
Identity = 91/175 (52.00%), Postives = 119/175 (68.00%), Query Frame = 2
Query:   83 TTSQNAITRKAGGRKEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVGVPSE 607
            +T   A TRKAGG++    +  ++VDMREF S LP+++H+RG+ I PV LEVGDYIL+P +CVERKS+ DL  S  SGRLY Q   M RYYR PVLLIEF   K FS         +++ +++ SKL+LL LHFPRLR++W  S HATAE+F  LK N+ +PD A A+ +   SE
Sbjct:  659 STDAPADTRKAGGQEHNGTQPSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLNSGRLYSQCLAMSRYYRRPVLLIEFDAGKPFSLAPRGSFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSE 833          
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_MOUSE (DNA repair endonuclease XPF OS=Mus musculus GN=Ercc4 PE=2 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 2.083e-44
Identity = 89/168 (52.98%), Postives = 117/168 (69.64%), Query Frame = 2
Query:  104 TRKAGGRKEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVGVPSE 607
            TRKAGG+++   +  ++VDMREF S LP+++H+RG+ I PV LEVGDYIL+P +CVERKS+ DL  S  SGRLY Q   M RYYR PVLLIEF   K FS         +++ +++ SKL+LL LHFPRLR++W  S HATAE+F  LK N+ +PD A A+ +   SE
Sbjct:  670 TRKAGGQEQNGTQSSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQCLAMSRYYRRPVLLIEFDPSKPFSLAPRGAFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSE 837          
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: RAD16_SCHPO (DNA repair protein rad16 OS=Schizosaccharomyces pombe GN=rad16 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.190e-41
Identity = 84/154 (54.55%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  137 KEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVGV 598
            K ++VIVD+REF SSLP++LH     +IP  L VGDYILSP +CVERKSI+DL  S ++GRLY Q E M  YY IPVLLIEF Q +SF+    SD+  ++  N++ SKL LL L FP LRI+WS S + T+ IF  LKA + EPD A A  +G+
Sbjct:  664 KTLKVIVDLREFRSSLPSILHGNNFSVIPCQLLVGDYILSPKICVERKSIRDLIQSLSNGRLYSQCEAMTEYYEIPVLLIEFEQHQSFTSPPFSDLSSEIGKNDVQSKLVLLTLSFPNLRIVWSSSAYVTSIIFQDLKAMEQEPDPASAASIGL 817          
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_DROME (DNA repair endonuclease XPF OS=Drosophila melanogaster GN=mei-9 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.183e-39
Identity = 84/174 (48.28%), Postives = 117/174 (67.24%), Query Frame = 2
Query:   86 TSQNAITRKAGGR--KEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNN--IISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVG 595
            T +NA +R+AGG+  +  ++  +VIVDMREF S LP ++H+RG+ ++P+ + +GDYIL+P +CVERKSI DL  S  SGRLY+Q   M R+Y  P+LLIEF Q+K F  Q    +    +  N  I+ KL LL LHFP+LR+IWS S +ATA++F  LK  + EPD   A  +G
Sbjct:  675 TDENAKSRQAGGQAPQATKETPKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLNSGRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQGKFMLSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAALG 848          
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_DICDI (DNA repair endonuclease XPF OS=Dictyostelium discoideum GN=ercc4 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 2
Query:  122 RKEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDD-VTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPD 571
            +++ +++  +I+D  EF SSLP VLH  G  IIP+ LEVGD++LSP+ C+ERKS+ DL  SF SGRL+ Q+E M R Y+ P+LLIEF  ++ F   +  ++  D ++P ++ SKL  L   FPRLR+IWSRS + T +I+  +K    EPD
Sbjct:  731 QQQQQQKKTIIIDSHEFKSSLPVVLHNNGYEIIPLRLEVGDFVLSPIHCIERKSVSDLIGSFNSGRLFTQIEAMNRIYKNPILLIEFDPNQPFYLVAPDELQKDYLSPFSLPSKLVFLTKTFPRLRVIWSRSYYCTTKIYDQIKDGYPEPD 881          
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: RAD1_YEAST (DNA repair protein RAD1 OS=Saccharomyces cerevisiae GN=RAD1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30
Identity = 75/180 (41.67%), Postives = 109/180 (60.56%), Query Frame = 2
Query:  104 TRKAGGRKEVEKEMQ--VIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASD--------------IGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVG 595
            TR AGG++      Q  VIVD REF +SLP +L++ G+R+IP +L VGDY+++P +C+ERKSI DL  S  + RL +Q + M++YY  P LLIEF + +SFS +  S+              I   ++ + I  KL+ LVL FP L+IIWS S   T  I   LK  +++PD + A+ +G
Sbjct:  805 TRNAGGQQGFHNLTQDVVIVDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQCKKMLKYYAYPTLLIEFDEGQSFSLEPFSERRNYKNKDISTVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAVILG 984          
The following BLAST results are available for this feature:
BLAST of CX288075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
XPF_ARATH1.807e-9782.93DNA repair endonuclease UVH1 OS=Arabidopsis thalia... [more]
XPF_HUMAN2.906e-4652.84DNA repair endonuclease XPF OS=Homo sapiens GN=ERC... [more]
XPF_CRIGR7.158e-4552.00DNA repair endonuclease XPF OS=Cricetulus griseus ... [more]
XPF_MOUSE2.083e-4452.98DNA repair endonuclease XPF OS=Mus musculus GN=Erc... [more]
RAD16_SCHPO8.190e-4154.55DNA repair protein rad16 OS=Schizosaccharomyces po... [more]
XPF_DROME1.183e-3948.28DNA repair endonuclease XPF OS=Drosophila melanoga... [more]
XPF_DICDI1.654e-3346.36DNA repair endonuclease XPF OS=Dictyostelium disco... [more]
RAD1_YEAST1.003e-3041.67DNA repair protein RAD1 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionC01016E05SK Veg1 Citrus clementina cDNA clone C01016E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288075 ID=CX288075; Name=CX288075; organism=Citrus clementina; type=EST; length=721bp
GAATTCGGCACGAGGGCTGAAATCGATTAAAAATCAGGATGGGCACTGTC
TGGGATTGAATTCTTCTACAGAGGCACAGGCCACCACTTCCCAGAATGCA
ATAACTCGAAAGGCAGGTGGAAGAAAGGAAGTTGAGAAAGAAATGCAGGT
CATAGTGGACATGAGGGAGTTCATGAGTAGCCTCCCTAATGTTCTCCATC
AGAGGGGCATGCGCATTATACCAGTGGTTTTGGAAGTTGGTGATTATATT
CTGTCACCATTAATGTGTGTTGAGAGAAAGAGTATCCAAGATCTATTTAC
AAGCTTCACGTCTGGCCGCCTTTATCACCAAGTGGAAACAATGGTCCGCT
ATTACAGAATACCTGTTCTTCTGATTGAGTTTTCACAAGACAAAAGCTTT
TCATTTCAGTCTGCAAGTGATATTGGTGATGATGTGACACCAAATAATAT
TATATCCAAGTTGTCGCTGCTTGTTCTACATTTTCCTCGCTTGAGAATCA
TCTGGTCTCGCAGTTTGCATGCAACTGCTGAAATATTTGCTGCACTGAAA
GCAAATCAAGATGAACCTGACGAGGCANAGGCAATTAGAGTTGGTGTCCC
CTCCGAAGATGGTATAGTGGAAAATGATGTGAGAGCCGAAAATTACATAC
ATCTGCTGTGGAGTTCCTAAGGCGACTCCCTGGTGTGACAGATTCAACTA
CAGGTCTATTATGGATGGATG
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