CX288075
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_ARATH (DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1 SV=2) HSP 1 Score: 345.51 bits (885), Expect = 1.807e-97 Identity = 170/205 (82.93%), Postives = 189/205 (92.20%), Query Frame = 2 Query: 32 NQDGHCLGLNSSTEAQATTSQNAITRKAGGRKEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVGVPSEDGIVENDVRAENY 646 +QDG C+G NSSTE A+++QN++TRKAGGRKE+EKE QVIVDMREFMSSLPNVLHQ+GM+IIPV LEVGDYILSP +CVERKSIQDLF SFTSGRL+HQVE M RYYRIPVLLIEFSQDKSFSFQS+SDI DDVTP NIISKLSLLVLHFPRLR++WSRSLHATAEIF LK+NQDEPDE AIRVGVPSE+GI+END+RAENY Sbjct: 687 DQDGLCMGSNSSTEFPASSTQNSLTRKAGGRKELEKETQVIVDMREFMSSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQSFTSGRLFHQVEMMSRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLHFPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENY 891 HSP 2 Score: 32.3426 bits (72), Expect = 1.807e-97 Identity = 14/17 (82.35%), Postives = 17/17 (100.00%), Query Frame = 1 Query: 646 HTSAVEFLRRLPGVTDS 696 +TSAVEFLRRLPGV+D+ Sbjct: 892 NTSAVEFLRRLPGVSDA 908
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_HUMAN (DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3) HSP 1 Score: 185.267 bits (469), Expect = 2.906e-46 Identity = 93/176 (52.84%), Postives = 123/176 (69.89%), Query Frame = 2 Query: 80 ATTSQNAITRKAGGRKEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVGVPSE 607 A+ + TRKAGG+++ + ++VDMREF S LP+++H+RG+ I PV LEVGDYIL+P MCVERKSI DL S +GRLY Q +M RYY+ PVLLIEF K FS S + +++ N+I SKL+LL LHFPRLRI+W S HATAE+F LK ++ +PD A A+ + SE Sbjct: 661 ASADVSTDTRKAGGQEQNGTQQSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQCISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEISSNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADSE 836
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_CRIGR (DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2 SV=3) HSP 1 Score: 180.644 bits (457), Expect = 7.158e-45 Identity = 91/175 (52.00%), Postives = 119/175 (68.00%), Query Frame = 2 Query: 83 TTSQNAITRKAGGRKEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVGVPSE 607 +T A TRKAGG++ + ++VDMREF S LP+++H+RG+ I PV LEVGDYIL+P +CVERKS+ DL S SGRLY Q M RYYR PVLLIEF K FS +++ +++ SKL+LL LHFPRLR++W S HATAE+F LK N+ +PD A A+ + SE Sbjct: 659 STDAPADTRKAGGQEHNGTQPSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLNSGRLYSQCLAMSRYYRRPVLLIEFDAGKPFSLAPRGSFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSE 833
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_MOUSE (DNA repair endonuclease XPF OS=Mus musculus GN=Ercc4 PE=2 SV=3) HSP 1 Score: 179.104 bits (453), Expect = 2.083e-44 Identity = 89/168 (52.98%), Postives = 117/168 (69.64%), Query Frame = 2 Query: 104 TRKAGGRKEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVGVPSE 607 TRKAGG+++ + ++VDMREF S LP+++H+RG+ I PV LEVGDYIL+P +CVERKS+ DL S SGRLY Q M RYYR PVLLIEF K FS +++ +++ SKL+LL LHFPRLR++W S HATAE+F LK N+ +PD A A+ + SE Sbjct: 670 TRKAGGQEQNGTQSSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQCLAMSRYYRRPVLLIEFDPSKPFSLAPRGAFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSE 837
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: RAD16_SCHPO (DNA repair protein rad16 OS=Schizosaccharomyces pombe GN=rad16 PE=1 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 8.190e-41 Identity = 84/154 (54.55%), Postives = 107/154 (69.48%), Query Frame = 2 Query: 137 KEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVGV 598 K ++VIVD+REF SSLP++LH +IP L VGDYILSP +CVERKSI+DL S ++GRLY Q E M YY IPVLLIEF Q +SF+ SD+ ++ N++ SKL LL L FP LRI+WS S + T+ IF LKA + EPD A A +G+ Sbjct: 664 KTLKVIVDLREFRSSLPSILHGNNFSVIPCQLLVGDYILSPKICVERKSIRDLIQSLSNGRLYSQCEAMTEYYEIPVLLIEFEQHQSFTSPPFSDLSSEIGKNDVQSKLVLLTLSFPNLRIVWSSSAYVTSIIFQDLKAMEQEPDPASAASIGL 817
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_DROME (DNA repair endonuclease XPF OS=Drosophila melanogaster GN=mei-9 PE=1 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 1.183e-39 Identity = 84/174 (48.28%), Postives = 117/174 (67.24%), Query Frame = 2 Query: 86 TSQNAITRKAGGR--KEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNN--IISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVG 595 T +NA +R+AGG+ + ++ +VIVDMREF S LP ++H+RG+ ++P+ + +GDYIL+P +CVERKSI DL S SGRLY+Q M R+Y P+LLIEF Q+K F Q + + N I+ KL LL LHFP+LR+IWS S +ATA++F LK + EPD A +G Sbjct: 675 TDENAKSRQAGGQAPQATKETPKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLNSGRLYNQCVQMQRHYAKPILLIEFDQNKPFHLQGKFMLSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAALG 848
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: XPF_DICDI (DNA repair endonuclease XPF OS=Dictyostelium discoideum GN=ercc4 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33 Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 2 Query: 122 RKEVEKEMQVIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDD-VTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPD 571 +++ +++ +I+D EF SSLP VLH G IIP+ LEVGD++LSP+ C+ERKS+ DL SF SGRL+ Q+E M R Y+ P+LLIEF ++ F + ++ D ++P ++ SKL L FPRLR+IWSRS + T +I+ +K EPD Sbjct: 731 QQQQQQKKTIIIDSHEFKSSLPVVLHNNGYEIIPLRLEVGDFVLSPIHCIERKSVSDLIGSFNSGRLFTQIEAMNRIYKNPILLIEFDPNQPFYLVAPDELQKDYLSPFSLPSKLVFLTKTFPRLRVIWSRSYYCTTKIYDQIKDGYPEPD 881
BLAST of CX288075 vs. ExPASy Swiss-Prot
Match: RAD1_YEAST (DNA repair protein RAD1 OS=Saccharomyces cerevisiae GN=RAD1 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30 Identity = 75/180 (41.67%), Postives = 109/180 (60.56%), Query Frame = 2 Query: 104 TRKAGGRKEVEKEMQ--VIVDMREFMSSLPNVLHQRGMRIIPVVLEVGDYILSPLMCVERKSIQDLFTSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASD--------------IGDDVTPNNIISKLSLLVLHFPRLRIIWSRSLHATAEIFAALKANQDEPDEAXAIRVG 595 TR AGG++ Q VIVD REF +SLP +L++ G+R+IP +L VGDY+++P +C+ERKSI DL S + RL +Q + M++YY P LLIEF + +SFS + S+ I ++ + I KL+ LVL FP L+IIWS S T I LK +++PD + A+ +G Sbjct: 805 TRNAGGQQGFHNLTQDVVIVDTREFNASLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQCKKMLKYYAYPTLLIEFDEGQSFSLEPFSERRNYKNKDISTVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAVILG 984 The following BLAST results are available for this feature:
BLAST of CX288075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288075 ID=CX288075; Name=CX288075; organism=Citrus clementina; type=EST; length=721bpback to top |