CX288253

Overview
NameCX288253
Unique NameCX288253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length444
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig932 contig Ccv1_Contig932:245..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288253 vs. ExPASy Swiss-Prot
Match: MCCA_SOYBN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.251e-13
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 GQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 135
            GQP+LVLEAMKMEHVVKAP++G VHGLQ+  G+QVSDGSVLF ++
Sbjct:  685 GQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSVK 729
[Close]
BLAST of CX288253 vs. ExPASy Swiss-Prot
Match: MCCA_ARATH (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=MCCA PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.246e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 GQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQG 138
            GQPILVLEAMKMEHVVKAP++G +  L+V AGQQVSDGS LFR++G
Sbjct:  689 GQPILVLEAMKMEHVVKAPSSGSIQDLKVKAGQQVSDGSALFRIKG 734
[Close]
BLAST of CX288253 vs. ExPASy Swiss-Prot
Match: MCCA_ORYSJ (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=MCCA PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.190e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 GQPILVLEAMKMEHVVKAPTTGVVHGLQVTAGQQVSDGSVLFRLQ 135
            GQP++V+EAMKMEHVVKAP  G V GL+ TAGQQV D SVLF ++
Sbjct:  688 GQPVMVMEAMKMEHVVKAPCAGYVEGLKATAGQQVFDSSVLFTVK 732
The following BLAST results are available for this feature:
BLAST of CX288253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MCCA_SOYBN3.251e-1375.56Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_ARATH4.246e-1376.09Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_ORYSJ5.190e-1168.89Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01018D07SK Veg1 Citrus clementina cDNA clone C01018D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288253 ID=CX288253; Name=CX288253; organism=Citrus clementina; type=EST; length=444bp
GGACAACCTATTTTAGTCTTGGAAGCAATGAAGATGGAGCATGTAGTGAA
GGCACCAACTACTGGGGTAGTCCATGGGCTTCAAGTGACAGCTGGACAAC
AGGTTTCGGATGGTAGTGTTCTCTTTAGGCTTCAAGGTTGAAGTGGATCA
TATGCTCGGCCAGGATGTATAGGATCTATTGTGGAGTTCCTTTCCATTAC
AGAATCTTGCTCGAGAATCACGCAGCATGTATCAATGAATAAAGGATTTG
ACCAACTGAAACTACATCTGTTGTTAACGGACAAAATTCAGATAAGCTGC
TAAGTACATATTAATAACATCATTGAAGAAAATGTTAGTATCATCAAAGT
TGAAAGATGTAAACAAAAACTCTTTGTAAATTACATTCCATCTGGTAATA
ATAGTCTTTTCAGTTCTTTCTCAAGCAAAAAAAAAAAAAAAAAA
back to top