CX288475

Overview
NameCX288475
Unique NameCX288475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIP2P_ARATH (Plastidial lipoyltransferase 2 OS=Arabidopsis thaliana GN=LIP2p PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.231e-50
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 3
Query:  381 RCECFDLYKELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            +C CFDLY +LVPY +AWSWQK+IV+EKK LI+RN+DC DT+I+LQHSPVYTMGT  +E+YLNFD+KD PF VYRTERGGEVTYHGPGQLVMYPIINLRNH+MDLHW
Sbjct:   44 KCLCFDLYDKLVPYKKAWSWQKSIVEEKKTLIDRNQDCADTVILLQHSPVYTMGTASTEDYLNFDIKDAPFNVYRTERGGEVTYHGPGQLVMYPIINLRNHEMDLHW 150          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPBL_ARATH (Putative lipoyltransferase-like protein, chloroplastic OS=Arabidopsis thaliana GN=At1g47575 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.508e-49
Identity = 83/107 (77.57%), Postives = 97/107 (90.65%), Query Frame = 3
Query:  381 RCECFDLYKELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            +CECFDLY +L+PY +AWSWQK+I+ EKKALI++N++C D+LI+LQH  VYTMGTG SE YLNFD+K+ PF VYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW
Sbjct:   46 KCECFDLYDQLIPYKKAWSWQKSILNEKKALIDKNQECSDSLIILQHPSVYTMGTGSSENYLNFDIKNAPFDVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 152          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SYNP6 (Octanoyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=lipB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  420 YNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            Y + W+WQ+ +   ++     N D PD L++L+H  VYT+G G S  +L FD + PP  VYR ERGGEVT+H PGQLV YPI+NLR+H+ DLHW
Sbjct:   16 YAQVWAWQRQLQDNRR----NNPDRPDVLLLLEHPAVYTLGRGSSLAHLKFDPQHPPAPVYRIERGGEVTHHAPGQLVGYPILNLRHHRCDLHW 105          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SYNE7 (Octanoyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=lipB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  420 YNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            Y + W+WQ+ +   ++     N D PD L++L+H  VYT+G G S  +L FD + PP  VYR ERGGEVT+H PGQLV YPI+NLR+H+ DLHW
Sbjct:   16 YAQVWAWQRQLQDNRR----NNPDRPDVLLLLEHPAVYTLGRGSSLAHLKFDPQHPPAPVYRIERGGEVTHHAPGQLVGYPILNLRHHRCDLHW 105          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_ANAVT (Octanoyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=lipB PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 3
Query:  390 CFDLYKELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            C    K L+PY EA +WQ++++ ++        +  D LI+L+H PVYT+G G S E+L FD     F+++R ERGGEVTYH PGQLV YPI+NLR H+ DLHW
Sbjct:   12 CLLYNKGLMPYLEAHAWQRSLLHQRIDY----PNLEDVLILLEHPPVYTLGQGSSLEFLKFDPNQSEFEIHRIERGGEVTYHCPGQLVGYPILNLRRHRQDLHW 111          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_SYNY3 (Octanoyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=lipB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            LVPY +AW +Q+  V+ K    +R+    D L++L+H PVYT+GTG   +YL FD   PP +++RTERGGEVTYH PGQLV YPI++L + + DLHW
Sbjct:   13 LVPYCQAWQYQRRWVRAK----QRDRQREDGLMLLEHPPVYTLGTGSQTKYLKFDPAYPPAELWRTERGGEVTYHCPGQLVGYPILDLNHFQKDLHW 105          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_ANASP (Octanoyltransferase OS=Anabaena sp. (strain PCC 7120) GN=lipB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  390 CFDLYKELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            C    K L+PY  A +WQ+++++++        +  D LI+L+H PVYT+G G S E+L FD     F+++R ERGGEVTYH PGQLV YPI+NL  H+ DLHW
Sbjct:   12 CLLYNKGLMPYLAAHAWQRSLLRQRIDY----PNLEDVLILLEHPPVYTLGQGSSLEFLKFDPNQSEFEIHRIERGGEVTYHCPGQLVGYPILNLHRHRQDLHW 111          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_THEEB (Octanoyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=lipB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  411 LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            ++PY +AW WQ+ +V E++    +N   PD L+ L+H  +YT+G G +  +++FD      +V R ERGG+VTYH PGQLV YPI+NLR H  DLHW
Sbjct:   13 IIPYRDAWRWQQQLVAERR----QNLAAPDVLLTLEHPAIYTLGQGATTAHIHFDPVATGIEVLRIERGGDVTYHCPGQLVAYPILNLRRHCCDLHW 105          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_GLOVI (Octanoyltransferase OS=Gloeobacter violaceus GN=lipB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  390 CFDLYKELVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPP-FQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            C  +   LVPY  AW WQ+ ++  + A    + D PD L++L+H PVYT+G G   +++   L DP   ++YRTERGGEVTYHGPGQLV YPI++L  ++ DLHW
Sbjct:    4 CLLIEPGLVPYLTAWEWQRQLMATRIA----HRDRPDVLMLLEHPPVYTLGQGADAKHV---LVDPASIELYRTERGGEVTYHGPGQLVGYPILDLTGYRQDLHW 101          
BLAST of CX288475 vs. ExPASy Swiss-Prot
Match: LIPB_NOSP7 (Octanoyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lipB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 47/102 (46.08%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  399 LYKE-LVPYNEAWSWQKNIVKEKKALIERNEDCPDTLIVLQHSPVYTMGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHW 701
            LY + L+PY +A  WQ++++ E+      +    D LI+L+H PVYT+G G + +++ FD+    + V+R ERGGEVTYH PGQLV YPI+NL+ ++ DLHW
Sbjct:   14 LYNQGLMPYLDAHRWQRSLLNERI----HDPSLDDVLILLEHPPVYTLGQGSNSDFIKFDIDQGEYDVHRVERGGEVTYHCPGQLVGYPILNLQRYRKDLHW 111          
The following BLAST results are available for this feature:
BLAST of CX288475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LIP2P_ARATH9.231e-5079.44Plastidial lipoyltransferase 2 OS=Arabidopsis thal... [more]
LIPBL_ARATH3.508e-4977.57Putative lipoyltransferase-like protein, chloropla... [more]
LIPB_SYNP63.905e-2452.13Octanoyltransferase OS=Synechococcus sp. (strain A... [more]
LIPB_SYNE73.905e-2452.13Octanoyltransferase OS=Synechococcus elongatus (st... [more]
LIPB_ANAVT5.101e-2450.00Octanoyltransferase OS=Anabaena variabilis (strain... [more]
LIPB_SYNY31.136e-2352.58Octanoyltransferase OS=Synechocystis sp. (strain P... [more]
LIPB_ANASP4.318e-2348.08Octanoyltransferase OS=Anabaena sp. (strain PCC 71... [more]
LIPB_THEEB1.256e-2247.42Octanoyltransferase OS=Thermosynechococcus elongat... [more]
LIPB_GLOVI2.799e-2248.57Octanoyltransferase OS=Gloeobacter violaceus GN=li... [more]
LIPB_NOSP76.235e-2246.08Octanoyltransferase OS=Nostoc punctiforme (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC01020H01SK Veg1 Citrus clementina cDNA clone C01020H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288475 ID=CX288475; Name=CX288475; organism=Citrus clementina; type=EST; length=703bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGTGCATTTTTGGCTTCATGTTT
GATCAAATGGATCCTTCTTCGACCGACTAGTGGAAGATCATTTTTTTTTC
CTTTCTTTAAAAAAAAAAAGAAGAAGAAAAAAGCATGATTCTTGCAGCAA
CTTCAGGTTTTTGTTCAGTCCCAACATGCCCAAGTCTTGACCAATCCAAA
AAGCTAAACCGTGGCAAAATCTTCTGCGAATCAAAGCAAGTATTATATTC
CAAAACCTCAATAACCCATGAAAGAAGAAAAACGTAAGTGAAACGCAAAT
TGCTCTGTCTTTTTCACAAACACCTTCTATTCAATGCATTGGACAGTGTA
ACTCGACTTGTTCAACTTAATTATTGGTTCAGGTGTGAGTGCTTTGATTT
GTACAAGGAACTGGTTCCTTACAATGAAGCATGGTCATGGCAGAAAAACA
TAGTAAAGGAAAAGAAGGCGTTGATTGAAAGAAATGAAGACTGCCCCGAC
ACCCTGATTGTTCTACAGCATAGTCCTGTTTATACAATGGGTACTGGTGG
CTCTGAAGAGTACCTTAATTTTGACTTAAAGGACCCTCCTTTTCAAGTTT
ATCGAACTGAACGTGGCGGTGAAGTTACCTATCATGGTCCTGGCCAGCTA
GTTATGTACCCTATTATCAATCTGCGAAATCACAAGATGGATCTTCATTG
GTA
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