CX288516

Overview
NameCX288516
Unique NameCX288516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:987..1447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.696e-37
Identity = 71/81 (87.65%), Postives = 78/81 (96.30%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA 245
            ITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK+KFIDTSSK GHGRFQTT EKQ+++G++KA
Sbjct:  309 ITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 144.821 bits (364), Expect = 1.636e-34
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGR 236
            ITPMGGFPHYGIVK+DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIK+KFID +S  GHGRFQT+QEK K+YGR
Sbjct:  309 ITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 142.51 bits (358), Expect = 8.119e-34
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRM 239
            +TPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL QTSRLALEEIK+KFIDT+S  GHGRFQT+ EK ++Y R+
Sbjct:  309 VTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.097e-28
Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            ITPMGGFPHYG V +D++MIKGCC+G KKR++TLR+SLLK T R ALE+IK+KFIDTSSK+GHGRFQT  +K  + G +K
Sbjct:  314 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.797e-26
Identity = 53/90 (58.89%), Postives = 69/90 (76.67%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAKKSRV 272
            + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+SL+ QT R A E+I +K+IDTSSK GHGRFQT  EK+ + G++K  L A+   V
Sbjct:  311 VNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLKKDLIAESEAV 400          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.388e-25
Identity = 51/80 (63.75%), Postives = 67/80 (83.75%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            ITPMGGFP YGIV  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  311 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 3.092e-25
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAKK 263
            ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR ALE I++KFIDT+SK GHGRFQT QEK+ + G  K  L  +K
Sbjct:  314 ITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKEK 400          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.175e-24
Identity = 49/80 (61.25%), Postives = 66/80 (82.50%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            I PMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  311 INPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.175e-24
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242
            ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR A+E I++KFIDT+SK GHGRFQT QEK+ + G  K
Sbjct:  314 ITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 2.004e-24
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3
Query:    3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAKK 263
            I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SK GHGRFQT +EK+ + G +K    AK+
Sbjct:  314 INPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400          
The following BLAST results are available for this feature:
BLAST of CX288516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_ORYSJ2.696e-3787.6560S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH1.636e-3485.9060S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH8.119e-3483.5460S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_DROME5.097e-2868.7560S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_TOXCA2.797e-2658.8960S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_CAEEL1.388e-2563.7560S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3L_BOVIN3.092e-2562.0760S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_CAEBR1.175e-2461.2560S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3L_HUMAN1.175e-2463.7560S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_RAT2.004e-2460.9260S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC02001C09SK IF1 Citrus clementina cDNA clone C02001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288516 ID=CX288516; Name=CX288516; organism=Citrus clementina; type=EST; length=463bp
ACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAAAGATGAT
TATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGGTGGTCAC
TCTTCGTCAGTCGCTTCTCAAACAGACGTCTCGTTTAGCTCTTGAGGAAA
TCAAAATCAAGTTCATTGATACCTCTTCCAAGATTGGGCATGGCCGCTTC
CAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGCATAATT
ATATGCTAAAAAGTCAAGAGTTTTGCACCGTTATAGTTAATTCAGCCAGT
CTAAATTTTATCCAGTTTGACTATCTTGGAACAGTTTTTGAGCCTGGCAT
CAGCTGTGTTTCTTTCCATGTTTCTTTTTCTTTTTCCTTTGGTCTTTTTA
TTTTTTAAGAGATGGTCGTGCTTTATTCTATTGAATATTTTTAAATTTAA
AAAAATTCCTCAG
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