CX288516
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 2.696e-37 Identity = 71/81 (87.65%), Postives = 78/81 (96.30%), Query Frame = 3 Query: 3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA 245 ITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK+KFIDTSSK GHGRFQTT EKQ+++G++KA Sbjct: 309 ITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4) HSP 1 Score: 144.821 bits (364), Expect = 1.636e-34 Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 3 Query: 3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGR 236 ITPMGGFPHYGIVK+DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIK+KFID +S GHGRFQT+QEK K+YGR Sbjct: 309 ITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5) HSP 1 Score: 142.51 bits (358), Expect = 8.119e-34 Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 3 Query: 3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRM 239 +TPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL QTSRLALEEIK+KFIDT+S GHGRFQT+ EK ++Y R+ Sbjct: 309 VTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3) HSP 1 Score: 123.25 bits (308), Expect = 5.097e-28 Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = 3 Query: 3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242 ITPMGGFPHYG V +D++MIKGCC+G KKR++TLR+SLLK T R ALE+IK+KFIDTSSK+GHGRFQT +K + G +K Sbjct: 314 ITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 2.797e-26 Identity = 53/90 (58.89%), Postives = 69/90 (76.67%), Query Frame = 3 Query: 3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAKKSRV 272 + PMGGFPHYG+V D++MI+GCCVG KKR +TLR+SL+ QT R A E+I +K+IDTSSK GHGRFQT EK+ + G++K L A+ V Sbjct: 311 VNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLKKDLIAESEAV 400
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.388e-25 Identity = 51/80 (63.75%), Postives = 67/80 (83.75%), Query Frame = 3 Query: 3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242 ITPMGGFP YGIV DY+M++G +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K Sbjct: 311 ITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3) HSP 1 Score: 114.005 bits (284), Expect = 3.092e-25 Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 3 Query: 3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAKK 263 ITP+GGFPHYG V +D++M+KGC G KKRV+TLR+SLL SR ALE I++KFIDT+SK GHGRFQT QEK+ + G K L +K Sbjct: 314 ITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKEK 400
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 1.175e-24 Identity = 49/80 (61.25%), Postives = 66/80 (82.50%), Query Frame = 3 Query: 3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242 I PMGGFP YG+V DY+M++G +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K Sbjct: 311 INPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3) HSP 1 Score: 112.079 bits (279), Expect = 1.175e-24 Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 3 Query: 3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMK 242 ITP+GGFPHYG V +D++M+KGC G KKRV+TLR+SLL SR A+E I++KFIDT+SK GHGRFQT QEK+ + G K Sbjct: 314 ITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
BLAST of CX288516 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3) HSP 1 Score: 111.309 bits (277), Expect = 2.004e-24 Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 3 Query: 3 ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKIGHGRFQTTQEKQKYYGRMKA*LYAKK 263 I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SK GHGRFQT +EK+ + G +K AK+ Sbjct: 314 INPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400 The following BLAST results are available for this feature:
BLAST of CX288516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288516 ID=CX288516; Name=CX288516; organism=Citrus clementina; type=EST; length=463bpback to top |