CX288699
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.061e-25 Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 3 Query: 12 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374 D+T + +RD LWL YPL+ I YF+ S FYD+ CNNEQLKM+ LD+S L M G+EY L + +EP F+I KQ R P V YYV++G+IYQAP+L VF +R+ +++ ++ Sbjct: 65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDGLEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHL 182
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_PONAB (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii GN=MED6 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21 Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 3 Query: 12 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE +KM+ L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H I Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGI 126
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_MOUSE (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE=2 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21 Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 3 Query: 12 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE +KM+ L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H I Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGI 126
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_HUMAN (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens GN=MED6 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 4.612e-21 Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 3 Query: 12 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE +KM+ L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H I Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGI 126
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_BOVIN (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.024e-21 Identity = 52/123 (42.28%), Postives = 78/123 (63.41%), Query Frame = 3 Query: 12 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE +KM+ L + L++M G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H I Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGI 126
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_ANOGA (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=MED6 PE=3 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20 Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = 3 Query: 24 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374 I + D W+ L+ + DYF+ + FYDRTCNNE ++M+ + L+ MTG+EY+ V +P L+VIRKQ R P + TPM YY++ G++YQAP L +VF++RI +H++ Sbjct: 19 ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVEYIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHL 132
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_DANRE (Mediator of RNA polymerase II transcription subunit 6 OS=Danio rerio GN=med6 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18 Identity = 48/123 (39.02%), Postives = 77/123 (62.60%), Query Frame = 3 Query: 12 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYI 374 ++ GI + D W+ L+ + + +YF+ + FYDRTCNNE +KM+ + L+++ G+EY+L EP L++IRKQ+R P +V P+ YY++ G +YQAP L +V S+R A+H I Sbjct: 9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQRS---TLDHLTQLVGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAVHGI 126
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_CANAL (Mediator of RNA polymerase II transcription subunit 6 OS=Candida albicans GN=MED6 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.063e-17 Identity = 43/109 (39.45%), Postives = 68/109 (62.39%), Query Frame = 3 Query: 63 LDRNMIFDYFTLSLFYDRTCNNEQLKMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353 L+ N + +YF+LS FYDRT NN+ L M+ S H S+LS+MTGIE++++ EP ++IRKQKR P+ + YY++ ++YQAP++ +V S+R+ Sbjct: 20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVIAYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRL 128
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_DROME (Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila melanogaster GN=MED6 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.369e-17 Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 3 Query: 63 LDRNMIFDYFTLSL--FYDRTCNNEQLKMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353 L + DYF FYD CNNE ++M+ + P L M G+EY+L V EP L+VIRKQ R P + TP+ YY++ G++Y+AP L NV ++RI Sbjct: 24 LSPQTVMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINSRI 119
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_YARLI (Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia lipolytica GN=MED6 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.834e-16 Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = 3 Query: 30 FRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLKMRS---------IHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353 +R W+ + L + + DYF S FYDR NN+ L+M++ + P Q L KMTGIE++++ V EP L+VI+KQ R P++ TP+ TY+V++ ++Y AP + + +R+ Sbjct: 9 WRSPEWIQAHQGLRTDNVLDYFAESPFYDRVSNNQVLRMQTQFNQQQTGQLTPQHFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAIMQSRV 127 The following BLAST results are available for this feature:
BLAST of CX288699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288699 ID=CX288699; Name=CX288699; organism=Citrus clementina; type=EST; length=375bpback to top |