CX288785
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.128e-14 Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = 2 Query: 35 RPIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430 RP + + ++G G IG+HL E++L + + I +D+ +D I+ L +P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG Sbjct: 314 RPARRTRVLILGVNGFIGNHLSERLLQDDRYDIYGMDIGSDAIERLRTKPNFHFIEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG 440
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14 Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 2 Query: 35 RPIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430 R ++ + ++G G IG+HL E++L + ++I +D+ +D I+ L +P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG Sbjct: 315 RSVRRTRVLILGVNGFIGNHLSERLLQDDRYEIYGMDIGSDAIERLRAKPNFHFIEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG 441
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.283e-14 Identity = 46/134 (34.33%), Postives = 71/134 (52.99%), Query Frame = 2 Query: 32 GRPIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430 GR + + ++G G IG+HL E++L + +++ LD+ +D I+ L P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG Sbjct: 313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDRYEVYGLDIGSDAIERLRSHPNFHYVEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG 440
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14 Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 2 Query: 32 GRPIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430 GR + + ++G G IG+HL E++L + + + LD+ +D I+ L P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG Sbjct: 313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDKYDVYGLDIGSDAIERLRSHPNFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG 440
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14 Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 2 Query: 32 GRPIKPMTICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430 GR + + ++G G IG+HL E++L + +++ LD+ +D I L P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG Sbjct: 313 GRGPRRTRVLILGVNGFIGNHLSERLLRDERYEVYGLDIGSDAIDRLRSHPRFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG 440
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14 Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 2 Query: 56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGK 445 + ++G G IG+HL E++L E +++ LD+ +D I L P G I H I++ IK D+ + L AI TP +Y PL +F + L +++YC + +KR+I ST EVYG K Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLTHPNFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVQYHKRIIFPSTSEVYGMCTDK 442
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 9.552e-14 Identity = 45/131 (34.35%), Postives = 69/131 (52.67%), Query Frame = 2 Query: 56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGK 445 + ++G G IG+HL E++L + ++I LD+ +D I LE + R F +I H +E IK D+ + L AI TP +Y PL +F + L +++ C + NKR+I ST EVYG K Sbjct: 318 VLILGVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLE------SPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDK 442
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.629e-13 Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2 Query: 56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430 + ++G G IG+HL E++L E +++ LD+ +D I L P G I H I++ +K D+ + L AI TP +Y PL +F + L +++YC + KR+I ST EVYG Sbjct: 318 VLILGVNGFIGNHLTERLLCEDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SHISS (Bifunctional polymyxin resistance protein arnA OS=Shigella sonnei (strain Ss046) GN=arnA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13 Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2 Query: 56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430 + ++G G IG+HL E++L E +++ LD+ +D I L P G I H I++ +K D+ + L AI TP +Y PL +F + L +++YC + KR+I ST EVYG Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437
BLAST of CX288785 vs. ExPASy Swiss-Prot
Match: ARNA_SHIFL (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri GN=arnA PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13 Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 2 Query: 56 ICMIGAGGLIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 430 + ++G G IG+HL E++L E +++ LD+ +D I L P G I H I++ +K D+ + L AI TP +Y PL +F + L +++YC + KR+I ST EVYG Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG 437 The following BLAST results are available for this feature:
BLAST of CX288785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288785 ID=CX288785; Name=CX288785; organism=Citrus clementina; type=EST; length=514bpback to top |