CX289086

Overview
NameCX289086
Unique NameCX289086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.583e-55
Identity = 102/143 (71.33%), Postives = 123/143 (86.01%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFKILSNNGPSSAEQPPSDQQSK 426
            RILKAGGFI  GRVNGSLNL+RAIGD+EFK NK LP+EKQIVTA+PD++T+ELCDDD+FLV+ACDGIWDC++SQ+LVDF+ +QL +ETKLSV+CEKV DRCLAP ++GGEGCDNMTMILV+FK   N  PS  E  P   Q++
Sbjct:  208 RILKAGGFIHAGRVNGSLNLSRAIGDMEFKQNKFLPSEKQIVTASPDVNTVELCDDDDFLVLACDGIWDCMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGEGCDNMTMILVRFK---NPTPSETELKPEASQAE 347          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.026e-53
Identity = 100/148 (67.57%), Postives = 122/148 (82.43%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFKILSNNGPSSAEQPPSDQQSKLASSS 441
            RILKAGGFI  GR+NGSLNL RAIGD+EFK NK LP+EKQ+VTA+PDI+TI+LCDDD+FLV+ACDGIWDC+SSQELVDF+ +QL +ETKLS +CEKV DRCLAP +A GEGCDNMT+ILVQFK  + +     +  P   + + +SSS
Sbjct:  208 RILKAGGFIHAGRINGSLNLTRAIGDMEFKQNKFLPSEKQMVTADPDINTIDLCDDDDFLVVACDGIWDCMSSQELVDFIHEQLKSETKLSTVCEKVVDRCLAPDTATGEGCDNMTIILVQFKKPNPSETEPEDSKPEPSEDEPSSSS 355          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.998e-52
Identity = 97/143 (67.83%), Postives = 120/143 (83.92%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA-GGEGCDNMTMILVQFK--ILSNNGPSSAEQPPSDQQ 420
            RILKAGG+IQ+GRVNG++NL+RAIGD+EFK NK L  +KQ++TANPDI+T+ELCDDD+FLV+ACDGIWDC+SSQ+LVDF+ + +  E+ LS +CE+V DRCLAPS  GGEGCDNMTMILVQFK  I  N   S AEQ  +D+Q
Sbjct:  208 RILKAGGYIQMGRVNGTINLSRAIGDIEFKQNKFLSPDKQMLTANPDINTVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHINTESSLSAVCERVLDRCLAPSTLGGEGCDNMTMILVQFKKPISQNKNVSPAEQSAADKQ 350          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 8.395e-51
Identity = 95/137 (69.34%), Postives = 112/137 (81.75%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA-GGEGCDNMTMILVQFK--ILSNNGPSSAEQ 402
            RI+KAGGFI +GR+NGSLNL RAIGD+EFK NK LP EKQIVTANPDI+ +ELCDDD+FLV+ACDGIWDC+SSQ+LVDF+ + +  E+ LS +CE+V DRCLAPS  GGEGCDNMTM+LVQFK  I  N      EQ
Sbjct:  208 RIVKAGGFIHMGRINGSLNLTRAIGDMEFKQNKFLPPEKQIVTANPDINVVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHIQKESSLSAVCERVLDRCLAPSTIGGEGCDNMTMVLVQFKKPITQNKKADVGEQ 344          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.795e-46
Identity = 87/143 (60.84%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNN-GPSSAEQPPSDQQSK 426
            RIL AGGFI  GRVNGSLNLARAIGD+E K N+ LPAE+QIVTA P+++T++L +DDEF+V+ACDGIWDC+SSQE+VDFV  ++  E  LS +CEK+ D CLAP +GG+GCDNMT+I+V+FK  S +   SS  Q  S ++ +
Sbjct:  207 RILNAGGFIVAGRVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDCMSSQEVVDFVHKEMNTEDSLSAVCEKLLDHCLAPVSGGDGCDNMTVIIVKFKKPSKSAATSSTNQSVSSEEMR 349          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: Y0417_DROME (Probable protein phosphatase CG10417 OS=Drosophila melanogaster GN=CG10417 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.963e-36
Identity = 76/150 (50.67%), Postives = 109/150 (72.67%), Query Frame = 1
Query:    1 RILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGE--GCDNMTMILVQFKILSNNGPSSAEQPPSDQQSKLASSS 441
            RI+KAGG + + GRVNG LNL+RA+GD  +K N +LPAE+Q+++A PDI  + +  +DEF+V+ACDGIW+ +SS+E+V+FVR +L +  KLS ICE++FD CLAP+  G+  GCDNMT ++VQFK       S+   PP+  + KL  +S
Sbjct:  441 RIIKAGGRVTLDGRVNGGLNLSRALGDHAYKTNVTLPAEEQMISALPDIKKLIITPEDEFMVLACDGIWNYMSSEEVVEFVRCRLKDNKKLSTICEELFDNCLAPNTMGDGTGCDNMTAVIVQFKKKLQELQSTI--PPNQTEDKLLKTS 588          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C2_SCHPO (Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.205e-34
Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAG--GEGCDNMTMILVQF 363
            RI  AGGFI  GRVNGSL L+RAIGD E+K + SLP EKQIVTA PD+    +  DDEFL++ACDGIWDC SSQ++V+FVR  +     L VICE + DRC+A ++   G GCDNMT+ +V F
Sbjct:  169 RITAAGGFIDFGRVNGSLALSRAIGDFEYKKDSSLPPEKQIVTAFPDVVIHNIDPDDEFLILACDGIWDCKSSQQVVEFVRRGIVARQSLEVICENLMDRCIASNSESCGIGCDNMTICIVAF 291          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1G_MACFA (Protein phosphatase 1G OS=Macaca fascicularis GN=PPM1G PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.140e-31
Identity = 78/164 (47.56%), Postives = 107/164 (65.24%), Query Frame = 1
Query:    1 RILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFKILSNNGPSSAEQPPSDQQSKLAS--SSAGTESN 459
            RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP E+Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE+VDF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK       ++AE  P   + KL    S+ G E N
Sbjct:  377 RIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK-----PRNTAELQPESGKRKLEEVLSTEGAEEN 535          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1G_HUMAN (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.140e-31
Identity = 78/164 (47.56%), Postives = 107/164 (65.24%), Query Frame = 1
Query:    1 RILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFKILSNNGPSSAEQPPSDQQSKLAS--SSAGTESN 459
            RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP E+Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE+VDF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK       ++AE  P   + KL    S+ G E N
Sbjct:  376 RIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK-----PRNTAELQPESGKRKLEEVLSTEGAEEN 534          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C2_CAEEL (Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans GN=T23F11.1 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.140e-31
Identity = 66/121 (54.55%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA--GGEGCDNMTMILV 357
            RI+ AGG+++  RVNG+L L+RA+GD  FK   + PAE+QIVTA PD+ T +L  D EF+V+ACDGIWD +++QE+VDFVR++L  +     ICE++  RCLAP    GG GCDNMT++LV
Sbjct:  164 RIIAAGGWVEFNRVNGNLALSRALGDFAFKNCDTKPAEEQIVTAFPDVITDKLTPDHEFIVLACDGIWDVMTNQEVVDFVREKLAEKRDPQSICEELLTRCLAPDCQMGGLGCDNMTVVLV 284          
The following BLAST results are available for this feature:
BLAST of CX289086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
P2C60_ARATH9.583e-5571.33Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C21_ARATH4.026e-5367.57Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C58_ORYSJ1.998e-5267.83Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C11_ORYSJ8.395e-5169.34Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C70_ORYSJ2.795e-4660.84Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
Y0417_DROME9.963e-3650.67Probable protein phosphatase CG10417 OS=Drosophila... [more]
PP2C2_SCHPO3.205e-3458.54Protein phosphatase 2C homolog 2 OS=Schizosaccharo... [more]
PPM1G_MACFA1.140e-3147.56Protein phosphatase 1G OS=Macaca fascicularis GN=P... [more]
PPM1G_HUMAN1.140e-3147.56Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE... [more]
PP2C2_CAEEL1.140e-3154.55Probable protein phosphatase 2C T23F11.1 OS=Caenor... [more]

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Properties
Property NameValue
Genbank descriptionC02008H11SK IF1 Citrus clementina cDNA clone C02008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289086 ID=CX289086; Name=CX289086; organism=Citrus clementina; type=EST; length=614bp
AGAATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAG
TTTAAATTTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAA
GTTTGCCTGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACT
ATTGAACTTTGTGATGACGATGAGTTTCTTGTCATAGCTTGTGATGGGAT
TTGGGATTGCCTTTCAAGTCAAGAACTTGTCGATTTTGTCAGGGATCAAT
TAACCAACGAAACAAAACTATCAGTCATTTGCGAGAAAGTATTCGATCGG
TGCTTGGCTCCATCAGCTGGTGGTGAAGGATGCGACAACATGACCATGAT
CTTGGTTCAGTTTAAAATTCTTTCTAATAATGGTCCTTCTTCGGCTGAGC
AGCCACCATCTGACCAACAATCCAAGTTAGCCAGCAGTTCAGCAGGGACT
GAATCGAATTAGCTGTAGCACTCTTTGCACTGACTAAATGGTACTCATTT
TCTACTGTCTGAAACACTGCTGAGCTCAGAACCATGGTCCCTGATTTTAC
ATTCGGAAAACGATTCTCATGATTTGGTTGTAAATATTTAAGCTTTTTCA
TTTTAATGGGATAG
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