CX289118

Overview
NameCX289118
Unique NameCX289118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1675 contig Ccv1_Contig1675:21..492. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289118 vs. ExPASy Swiss-Prot
Match: Y3972_ARATH (Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.376e-29
Identity = 66/110 (60.00%), Postives = 76/110 (69.09%), Query Frame = 3 
Query:  141 MSRRPVSSTRRLVDTGSFPFTGALQSKSRXXXXXXXXXXXXXXXXXXXYAFSGSGIFGGDKAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLL 470
            M+RR V STRR+ D GSFPF GAL SKSR                   YA+SG GIF   K  VS++ GD+SCT+E+QRAIP+LKKAYGD M KVLHVGPDTCSVVS+LL
Sbjct:    1 MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSIKE-VSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLL 109
The following BLAST results are available for this feature:
BLAST of CX289118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3972_ARATH8.376e-2960.00Uncharacterized protein At3g49720 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC02009D02SK IF1 Citrus clementina cDNA clone C02009D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289118 ID=CX289118; Name=CX289118; organism=Citrus clementina; type=EST; length=472bp
AGCAAGCTCTGATTACAGTTACAAAAGCACAGATCTAAGATCTATAACAT
CCGCTCAATGCTGTCCTCTTATTTCTCGATCTAAGCTGAACTCTCAATTC
GCATCGCTCTCTTCAATCACCATCACCTCATTAATCAGTCATGTCGAGGC
GTCCTGTGAGTTCAACTCGCCGATTAGTCGACACTGGAAGCTTTCCTTTT
ACTGGAGCTTTGCAGTCCAAATCCCGATCTTCACCTCTCCTATCCGTCGG
CCTTGTCCTCGTGGGAGCATTCCTTCTTATCGGCTATGCTTTCAGCGGCT
CGGGTATATTTGGAGGCGATAAAGCAGCTGTTAGTAGGATCGAAGGTGAC
TTTTCTTGCACATCAGAAATCCAAAGAGCTATACCTATTCTAAAGAAAGC
ATACGGTGATAGCATGCACAAAGTTTTACACGTGGGTCCTGATACCTGTT
CAGTGGTCTCTACACTGTTGAA
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