CX289199

Overview
NameCX289199
Unique NameCX289199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:245..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 4.345e-78
Identity = 142/173 (82.08%), Postives = 155/173 (89.60%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QI+SA+I GD VLA+AY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMD EYEGNVEATGEDYSVEPADTRRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAG++K+G+QLD EVHRKYI+GGHVAAYM TLMEDEPEKYQSHF+EYIKKGI+AD L
Sbjct:   63 QIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADEL 235          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.599e-72
Identity = 130/173 (75.14%), Postives = 147/173 (84.97%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+
Sbjct:   64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGM 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 1.599e-72
Identity = 130/173 (75.14%), Postives = 147/173 (84.97%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+
Sbjct:   64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGM 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 6.076e-72
Identity = 130/173 (75.14%), Postives = 146/173 (84.39%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEGNVEATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF KD KQLD+++HRKYIYGGHVA YM ++ E+EPEK+Q+HF+EY+KKGIDADG+
Sbjct:   64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGM 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 269.24 bits (687), Expect = 7.936e-72
Identity = 131/173 (75.72%), Postives = 146/173 (84.39%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF K+ KQLDAE+HR YIYGGHV+ YM  L EDEPEK Q+HF+ YIKKG++A+ +
Sbjct:   63 QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESI 235          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 7.936e-72
Identity = 131/173 (75.72%), Postives = 146/173 (84.39%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVF            IPHSDKRFAGF K+ KQLDAE+HR YIYGGHV+ YM  L EDEPEK Q+HF+ YIKKG++A+ +
Sbjct:   63 QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESI 235          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 7.723e-51
Identity = 98/174 (56.32%), Postives = 125/174 (71.84%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QI+ A I GD VL +AYAHELPRYG++VGLTNYAAAYCTGLLLARR+L  L + D+Y G  +  GED++VE   D  RPFRA LDVGL +TTTGNRVF            IPHS  RF G+ ++  QL+A+  R+YI+GGHV+ YM  L E++ EKY++HF+ +IK+GI AD +
Sbjct:   63 QIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEEDEEKYKAHFSRFIKEGITADSM 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.228e-49
Identity = 95/174 (54.60%), Postives = 124/174 (71.26%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QIV + I GD V+AAAY+ ELP YGL+VGLTNY+AAYC GLL+ARR+L  L + D Y+G  E  GEDY+VEP  D  +PF  LLD GL +T+TG++VF            IPH++KRF G++   K+LD EV +KYIYGGHVA Y  T+ E+EPEKYQ+HF+ Y++  I+ DG+
Sbjct:   63 QIVYSTIQGDVVMAAAYSKELPNYGLKVGLTNYSAAYCVGLLVARRILTKLNLADTYKGQEEPDGEDYNVEPVEDGPKPFYCLLDTGLKRTSTGSKVFAAMKGALDGGLDIPHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQEEEPEKYQAHFSSYVENEIEPDGI 234          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 7.992e-48
Identity = 91/174 (52.30%), Postives = 120/174 (68.97%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRR-PFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QI  + I GD ++ AAY+HELP+YG++VGLTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE  D     FR  LD GL++TTTG R+F            IPHS KRF G+  + K  +A+VHR++I+  H+A YM TL E+EPE +Q  F++YIK GI ADG+
Sbjct:   63 QIAYSRIEGDRIVCAAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGI 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.363e-47
Identity = 96/177 (54.24%), Postives = 123/177 (69.49%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT----RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QIVS+ I GD V A+AY+HEL  YG+E GLTN+AAAY TGLLLARRVLK L +D+ ++G  EA GE    E A+T    RRPF+A LDVGL +T+TG RVF            IPHS+ RF G+  + ++LDAE  +KYI+GGHVA YM TL +D+ E+Y+S F  YI+  ++ADGL
Sbjct:   63 QIVSSEITGDKVFASAYSHELKAYGIEHGLTNWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADDDEERYKSQFNRYIEDDLEADGL 239          
The following BLAST results are available for this feature:
BLAST of CX289199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL5_CUCSA4.345e-7882.0860S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL51_ORYSJ1.599e-7275.1460S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI1.599e-7275.1460S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ6.076e-7275.1460S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL52_ARATH7.936e-7275.7260S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH7.936e-7275.7260S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL5_SUBDO7.723e-5156.3260S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_DUNSA7.228e-4954.6060S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_LYSTE7.992e-4852.3060S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_NEUCR1.363e-4754.2460S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC02010C11SK IF1 Citrus clementina cDNA clone C02010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289199 ID=CX289199; Name=CX289199; organism=Citrus clementina; type=EST; length=520bp
ACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTT
ATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTAT
GCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGAT
GCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGG
ATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTT
GATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTGCTCT
GAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGT
TTGCTGGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGC
AAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGA
AGATGAGCCAGAGAAGTATCAATCTCACTTCACTGAGTACATCAAGAAAG
GAATTGATGCTGATGGCTTG
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