CX289265 | Citrus Genome Database

Overview


Name	CX289265
Unique Name	CX289265
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	422

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig183	contig	Ccv1_Contig183:49..470.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.456e-30
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV NVLPP GA+MS +Y+EKKD+DGFLYVTYSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.708e-29
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRI+LSAEKAIFIFV NVLPP GA+MS IYDE K+EDGFLYVTYSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFG 117

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.032e-29
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFV NVLPP G +MS +Y++KKDEDGFLY+TYSGENTFG
Sbjct:   50 KYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.292e-28
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYV+RKRIKLSAEKAIF+FV N LPP  A+MS IYDE KDEDGFLY+TYSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.910e-28
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.910e-28
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_YARLI (Autophagy-related protein 8 OS=Yarrowia lipolytica GN=ATG8 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 8.710e-28
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS+E+AIFIFV +VLPP  A+MS IY+E KDEDGFLYVTYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSSERAIFIFVDDVLPPTAALMSSIYEEHKDEDGFLYVTYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_PODAN (Autophagy-related protein 8 OS=Podospora anserina GN=ATG8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_PHYIN (Autophagy-related protein 8 OS=Phytophthora infestans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIF+ NVLPP  A+MS IY+E+KD DGFLY+TYSGENTFG
Sbjct:   47 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTAALMSNIYEEQKDVDGFLYITYSGENTFG 115

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_PHANO (Autophagy-related protein 8 OS=Phaeosphaeria nodorum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

The following BLAST results are available for this feature:

BLAST of CX289265 vs. ExPASy Swiss-Prot

BLAST of CX289265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73


Match Name	E-value	Identity	Description
ATG8F_ARATH	5.456e-30	89.86	Autophagy-related protein 8f OS=Arabidopsis thalia...	[more]
ATG8G_ARATH	2.708e-29	89.86	Autophagy-related protein 8g OS=Arabidopsis thalia...	[more]
ATG8E_ARATH	6.032e-29	85.51	Autophagy-related protein 8e OS=Arabidopsis thalia...	[more]
ATG8C_ARATH	2.292e-28	85.51	Autophagy-related protein 8c OS=Arabidopsis thalia...	[more]
ATG8C_ORYSJ	3.910e-28	85.51	Autophagy-related protein 8C OS=Oryza sativa subsp...	[more]
ATG8C_ORYSI	3.910e-28	85.51	Autophagy-related protein 8C OS=Oryza sativa subsp...	[more]
ATG8_YARLI	8.710e-28	85.51	Autophagy-related protein 8 OS=Yarrowia lipolytica...	[more]
ATG8_PODAN	1.138e-27	85.51	Autophagy-related protein 8 OS=Podospora anserina ...	[more]
ATG8_PHYIN	1.138e-27	84.06	Autophagy-related protein 8 OS=Phytophthora infest...	[more]
ATG8_PHANO	1.138e-27	85.51	Autophagy-related protein 8 OS=Phaeosphaeria nodor...	[more]

Pages

Properties


Property Name	Value
Genbank description	C02011A08SK IF1 Citrus clementina cDNA clone C02011A08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX289265 ID=CX289265; Name=CX289265; organism=Citrus clementina; type=EST; length=422bp
CCATCGAATTTAAATTATTCGCAATCATCATTCTTATACCACATAGTTTG
AACCGGCTATATACAAGCATAAAAGGGCATGTAAATAAAAAGCCGGATTA
TGACCGGCTCAAAGCCGGAAAACAAAAACACTAAATTCAAGATGGGTAGA
TTAACAAACGAAACGTTGGTAGAGGAAAAAGGGTAGCGGCCGATTATGCT
ATCCAAATGTGTTTTCACCACTGTAAGTAACATAGAGAAACCCATCTTCA
TCCTTTTTTTCATCATATATGGGAGACATTATTGCTCCTGGAGGCGGGAG
AACATTGCCCACAAATATAAAGATTGCCTTTTCTGCGCTCAGTTTAATTC
TCTTCCGTATCACATACACAAACTGACCCACTGTTAAGTCAGCAGGGACT
AAATATTTTGGGGGGGCCCGGT