CX289271

Overview
NameCX289271
Unique NameCX289271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289271 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.053e-50
Identity = 105/178 (58.99%), Postives = 118/178 (66.29%), Query Frame = 1 
Query:    1 MMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGQRHGMNAPDRVPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTGCDAQAPAYSGYDTPVRTASSSSSFYDNQLCPICLGNPKDMAFGCGHQTCCECGEDLQSCPICRTPIQTRIRLY 534
            MM+EFDDNIPARAFDNFQFVNFTEIM+KN   S KETEFAL+ALMEIP QYKAT+EL +LG+R+G   P+R PL                            +         Y    +PV   +SS+S  DNQLCPICL NPKDMAFGCGHQTCCECG DLQ CPICR PIQTRI+LY
Sbjct:  299 MMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGY-IPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPH-----PTEGYHVRSSPVPPPTSSAS--DNQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468
[Close]
BLAST of CX289271 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.164e-49
Identity = 105/179 (58.66%), Postives = 118/179 (65.92%), Query Frame = 1 
Query:    1 MMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGQRHGMNAPDRVPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTGCDAQAPAYSGYDTPVRTASSS-SSFYDNQLCPICLGNPKDMAFGCGHQTCCECGEDLQSCPICRTPIQTRIRLY 534
            MM+EFDDNIPARAFDNFQFVNFTEIMSKN D SRKETEFAL+ALMEIP QYKAT+EL +LG R+G N P R+PL                             +   ++ P +     P    S   SS  D QLCPICL NPK+MAFGCGHQTCCECG DL+ CPICR PIQTRI+LY
Sbjct:  333 MMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNG-NIPQRIPLPPPVQSGS---------------------SFSSSRIPNFEPSVPPYPFESKQMSSADDIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489
The following BLAST results are available for this feature:
BLAST of CX289271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGLG2_ARATH1.053e-5058.99E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.164e-4958.66E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC02011B02SK IF1 Citrus clementina cDNA clone C02011B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289271 ID=CX289271; Name=CX289271; organism=Citrus clementina; type=EST; length=597bp
ATGATGAAGGAATTTGATGATAACATCCCTGCTCGAGCTTTTGATAATTT
TCAGTTTGTGAACTTCACTGAAATCATGTCAAAGAATATGGATCTATCAA
GAAAGGAGACTGAATTTGCTCTTGCAGCTTTGATGGAAATACCTTCTCAA
TATAAGGCAACTCTTGAGCTTGGCATATTGGGCCAGCGGCATGGTATGAA
TGCTCCAGATAGGGTTCCTCTTCCCCCACCGCTTTATAGTGCATCATCTT
CCAGCAGCAGCACAAAACCTTCACGGTCAAGCAGTTTTCAGCCATCTGTA
CCTCCTTATACTGGATGTGATGCACAAGCACCTGCTTATTCTGGATATGA
TACACCGGTCAGAACAGCTTCGTCCTCAAGTTCTTTTTATGATAACCAGC
TGTGCCCCATTTGTCTTGGCAATCCAAAGGACATGGCCTTCGGTTGCGGA
CATCAGACATGCTGTGAATGTGGAGAAGACCTCCAATCATGCCCCATTTG
TCGGACCCCAATACAGACGAGAATCAGGCTTTATTAGCCAGTTTGCACCT
AGATTTTTTATTTGGTTCGGCTATAGCCTATTAGCTGATTCAAATGC
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