CX289293

Overview
NameCX289293
Unique NameCX289293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 4.098e-53
Identity = 100/162 (61.73%), Postives = 125/162 (77.16%), Query Frame = 3
Query:    3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488
            KMKEMG   S+LTYN+IMCLY+  GQ+EKVP VL EMK +N+ PDN+SYRICIN++GA  DLE +   LR+ME +  I +DW+TYA AA FYI     D+A ++LK +E RLE+KDG GYN LI+LYA LG K EVLRLWDLEK  CKR IN+DY+T+L++L
Sbjct:  151 KMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSL 312          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.884e-32
Identity = 62/162 (38.27%), Postives = 102/162 (62.96%), Query Frame = 3
Query:    3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488
            KMKE+ I  S+++YN +M LY+KTG+ EKVP ++ E+KA+N+ PD+++Y + + +  A +D+ G+E ++ EM     +  DW+TY++ A  Y+ A L  KA   L++ E +  Q+D   Y FLI+LY  LG  +EV R+W   + A  +  N  Y+ M++ L
Sbjct:  148 KMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVL 309          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 62/161 (38.51%), Postives = 94/161 (58.39%), Query Frame = 3
Query:    6 MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488
            M ++    ++L +N++M +Y   GQ EKVP ++  MK K+I P + +Y + I S G+  DL+G+E +L EM+++   +  W+T+A+ A  YIK  L  KA + LK  E  +       Y+FLI+LY  + N SEV R+WDL K       N  Y+TML AL
Sbjct:  166 MVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRAL 326          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26
Identity = 60/161 (37.27%), Postives = 99/161 (61.49%), Query Frame = 3
Query:    6 MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488
            M++ G AL  L +N +M LY    +Y+KV  ++ EMK K+I  D +SY I ++S G+   +E ME++ ++M+S   I  +W+T+++ A  YIK    +KA D L+K E R+  ++ I Y++L+SLY SLGNK E+ R+W + K+      N  Y  ++ +L
Sbjct:  195 MRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSL 355          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 65/163 (39.88%), Postives = 96/163 (58.90%), Query Frame = 3
Query:    3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488
            +MKE+G     L YN ++ LY +TG+Y  V  +L EM+ + + PD F+    +++Y   SD+EGME  L   E+   + LDW TYA  A+ YIKA L +KA ++L+K+E+ +  QK    Y  L+S Y + G K EV RLW L K     + N  YI+++ AL
Sbjct:  164 EMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYK-ELDGFYNTGYISVISAL 325          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 60/162 (37.04%), Postives = 98/162 (60.49%), Query Frame = 3
Query:    3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488
            K+  +G  ++   +N++M LY  +GQYEKV  V++ MK   I  +  SY + +N+    S +  +E + +EM     + + WS+  + A+ YIK+   +KA  VL+ AE+ L + + +GY FLI+LYASLGNK  V+RLW++ K+ C R    +YI +L +L
Sbjct:  168 KLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSL 329          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24
Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = 3
Query:    6 MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488
            M E+    ++L +N++M +Y +  Q EKVP ++  MK + I P   +Y I + S G+ +DL+G+E I+ EM         W+T+++ A  Y KA L +KA   LK  EE++   +   ++FL+SLYA +    EV R+W+  K A     N  Y+ ML+A+
Sbjct:  198 MDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAM 358          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.572e-20
Identity = 52/162 (32.10%), Postives = 96/162 (59.26%), Query Frame = 3
Query:    3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488
            KM E G   S L YN ++ +Y   GQ+EKVP ++ E+K +   PD  +Y + + ++ + +D+EG E +  + + +  +  DW TY+   + Y K + ++KA   LK+ E+ + +K+ + Y  LISL+A+LG+K  V   W   K++ K+  + +Y++M+ A+
Sbjct:  187 KMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRTS-PDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEK-LNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAV 346          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 5.973e-20
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 3
Query:    3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD-GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488
            KM+++G+ L  + YN +M LYS     EKV ++L EMK  ++  DN +    +  Y A  D+  ME  L + E    I L+W T    A  Y++A    KA  +L+  E+ ++QK     Y+ L+ LY   GN+ EVLR+W L K+      N  Y T++ +L
Sbjct:  163 KMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSL 325          
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 3
Query:   21 IALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK-KAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA 485
            +    +TYN++M LY   GQ EKVP+V+  +K K + PD F+Y + ++S  A  +++ +  IL EM         W  Y      YI ++ +  A   L  +AE+ + Q++ I Y+FL+ L+  LGNK  + ++W   +   +   +R YI +L +
Sbjct:  188 LTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSS 343          
The following BLAST results are available for this feature:
BLAST of CX289293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PP334_ARATH4.098e-5361.73Pentatricopeptide repeat-containing protein At4g21... [more]
PPR86_ARATH8.884e-3238.27Pentatricopeptide repeat-containing protein At1g60... [more]
PP300_ARATH6.588e-2738.51Pentatricopeptide repeat-containing protein At4g01... [more]
PPR3_ARATH1.124e-2637.27Pentatricopeptide repeat-containing protein At1g02... [more]
PP166_ARATH3.270e-2639.88Pentatricopeptide repeat-containing protein At2g20... [more]
PP400_ARATH4.722e-2537.04Pentatricopeptide repeat-containing protein At5g27... [more]
PPR4_ARATH8.904e-2434.78Pentatricopeptide repeat-containing protein At1g02... [more]
PP302_ARATH1.572e-2032.10Pentatricopeptide repeat-containing protein At4g02... [more]
PPR61_ARATH5.973e-2034.36Putative pentatricopeptide repeat-containing prote... [more]
PP372_ARATH8.625e-1930.77Pentatricopeptide repeat-containing protein At5g09... [more]

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Properties
Property NameValue
Genbank descriptionC02011D05SK IF1 Citrus clementina cDNA clone C02011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289293 ID=CX289293; Name=CX289293; organism=Citrus clementina; type=EST; length=488bp
GGAAAATGAAGGAGATGGGGATTGCATTATCAACTCTAACTTACAATGAC
ATCATGTGCCTCTACTCAAAAACTGGTCAGTATGAGAAGGTTCCCGATGT
GCTAACCGAGATGAAGGCAAAAAATATCTTCCCTGACAACTTCAGCTACA
GAATCTGCATCAATTCCTATGGTGCAAGATCTGATCTTGAGGGGATGGAA
ATTATCTTAAGAGAAATGGAGAGCCAACCTCACATTGTTTTGGACTGGAG
CACATATGCCTCTGCTGCCCATTTTTACATAAAAGCTAACCTTATTGATA
AAGCATCAGATGTTTTGAAGAAAGCAGAAGAGAGACTTGAGCAGAAAGAT
GGGATTGGCTATAACTTTTTGATATCACTCTATGCTAGTTTAGGGAATAA
GTCTGAGGTCCTGAGATTGTGGGATTTAGAGAAAACAGCTTGTAAGAGGT
ATATCAACAGGGACTACATCACCATGCTGGAAGCTTTG
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