CX289293
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 4.098e-53 Identity = 100/162 (61.73%), Postives = 125/162 (77.16%), Query Frame = 3 Query: 3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488 KMKEMG S+LTYN+IMCLY+ GQ+EKVP VL EMK +N+ PDN+SYRICIN++GA DLE + LR+ME + I +DW+TYA AA FYI D+A ++LK +E RLE+KDG GYN LI+LYA LG K EVLRLWDLEK CKR IN+DY+T+L++L Sbjct: 151 KMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSL 312
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 8.884e-32 Identity = 62/162 (38.27%), Postives = 102/162 (62.96%), Query Frame = 3 Query: 3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488 KMKE+ I S+++YN +M LY+KTG+ EKVP ++ E+KA+N+ PD+++Y + + + A +D+ G+E ++ EM + DW+TY++ A Y+ A L KA L++ E + Q+D Y FLI+LY LG +EV R+W + A + N Y+ M++ L Sbjct: 148 KMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVL 309
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27 Identity = 62/161 (38.51%), Postives = 94/161 (58.39%), Query Frame = 3 Query: 6 MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488 M ++ ++L +N++M +Y GQ EKVP ++ MK K+I P + +Y + I S G+ DL+G+E +L EM+++ + W+T+A+ A YIK L KA + LK E + Y+FLI+LY + N SEV R+WDL K N Y+TML AL Sbjct: 166 MVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRAL 326
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26 Identity = 60/161 (37.27%), Postives = 99/161 (61.49%), Query Frame = 3 Query: 6 MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488 M++ G AL L +N +M LY +Y+KV ++ EMK K+I D +SY I ++S G+ +E ME++ ++M+S I +W+T+++ A YIK +KA D L+K E R+ ++ I Y++L+SLY SLGNK E+ R+W + K+ N Y ++ +L Sbjct: 195 MRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSL 355
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26 Identity = 65/163 (39.88%), Postives = 96/163 (58.90%), Query Frame = 3 Query: 3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488 +MKE+G L YN ++ LY +TG+Y V +L EM+ + + PD F+ +++Y SD+EGME L E+ + LDW TYA A+ YIKA L +KA ++L+K+E+ + QK Y L+S Y + G K EV RLW L K + N YI+++ AL Sbjct: 164 EMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYK-ELDGFYNTGYISVISAL 325
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25 Identity = 60/162 (37.04%), Postives = 98/162 (60.49%), Query Frame = 3 Query: 3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488 K+ +G ++ +N++M LY +GQYEKV V++ MK I + SY + +N+ S + +E + +EM + + WS+ + A+ YIK+ +KA VL+ AE+ L + + +GY FLI+LYASLGNK V+RLW++ K+ C R +YI +L +L Sbjct: 168 KLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSL 329
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24 Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = 3 Query: 6 MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488 M E+ ++L +N++M +Y + Q EKVP ++ MK + I P +Y I + S G+ +DL+G+E I+ EM W+T+++ A Y KA L +KA LK EE++ + ++FL+SLYA + EV R+W+ K A N Y+ ML+A+ Sbjct: 198 MDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAM 358
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.572e-20 Identity = 52/162 (32.10%), Postives = 96/162 (59.26%), Query Frame = 3 Query: 3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488 KM E G S L YN ++ +Y GQ+EKVP ++ E+K + PD +Y + + ++ + +D+EG E + + + + + DW TY+ + Y K + ++KA LK+ E+ + +K+ + Y LISL+A+LG+K V W K++ K+ + +Y++M+ A+ Sbjct: 187 KMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRTS-PDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEK-LNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAV 346
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 5.973e-20 Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 3 Query: 3 KMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD-GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL 488 KM+++G+ L + YN +M LYS EKV ++L EMK ++ DN + + Y A D+ ME L + E I L+W T A Y++A KA +L+ E+ ++QK Y+ L+ LY GN+ EVLR+W L K+ N Y T++ +L Sbjct: 163 KMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSL 325
BLAST of CX289293 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19 Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 3 Query: 21 IALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK-KAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA 485 + +TYN++M LY GQ EKVP+V+ +K K + PD F+Y + ++S A +++ + IL EM W Y YI ++ + A L +AE+ + Q++ I Y+FL+ L+ LGNK + ++W + + +R YI +L + Sbjct: 188 LTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSS 343 The following BLAST results are available for this feature:
BLAST of CX289293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289293 ID=CX289293; Name=CX289293; organism=Citrus clementina; type=EST; length=488bpback to top |