CX289487

Overview
NameCX289487
Unique NameCX289487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289487_ssr28 microsatellite CX289487_ssr28:28..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.197e-57
Identity = 105/153 (68.63%), Postives = 126/153 (82.35%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GCGKT +  A A  C L FISVKGPELLNKYIG+SEQ VRD+FS+A++A PC+LFFDEFDSIAP+RGHDN+GVTDRVVNQFLT+LDGVE LTGV+V AATSRPDL+D ALLRPGRLD+ L+C+ P   ERLDIL  +  K+ L+  + LE ++
Sbjct:  910 GCGKTLLASAIAGECGLNFISVKGPELLNKYIGSSEQGVRDVFSRASSAKPCVLFFDEFDSIAPRRGHDNSGVTDRVVNQFLTQLDGVEGLTGVYVLAATSRPDLIDPALLRPGRLDKSLYCNIPEFNERLDILTCLKSKMNLSPSISLEQLS 1062          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.343e-55
Identity = 107/153 (69.93%), Postives = 124/153 (81.05%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT + G  A    + FISVKGPELL+KYIGASEQAVRDIF +A AA PC+LFFDEF+SIAP+RGHDNTGVTDRVVNQ LT+LDGVE L GV+V AATSRPDL+D ALLRPGRLD+ ++C  P    RL+IL V+S  LPLADDVDL+ +A
Sbjct:  884 GTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVA 1036          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 5.104e-55
Identity = 104/153 (67.97%), Postives = 124/153 (81.05%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT + G  A    + FIS+KGPELL+KYIGASEQAVRD+F +A AA PC+LFFDEF+SIAP+RGHDNTGVTDRVVNQ LT+LDGVE L GV+V AATSRPDL+D ALLRPGRLD+ ++C  P    RL+IL V+S+ L LADDVDL+ +A
Sbjct:  885 GTGKTLLAGVVARESGMNFISIKGPELLSKYIGASEQAVRDVFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLALADDVDLQHVA 1037          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.137e-54
Identity = 99/153 (64.71%), Postives = 125/153 (81.70%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GCGKT +  A AA C L FIS+KGPE+LNKYIG SEQ+VR++F +A AA PC+LFFDEFDSIAPKRGHD+TGVTDRVVNQ LT++DG E L GV+V AATSRPDL+D+ALLRPGRLD+ + CD P   +RLDIL+ ++R + ++  V+L ++A
Sbjct:  843 GCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERAQAAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQMLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKSVNLSSVA 995          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.177e-51
Identity = 98/162 (60.49%), Postives = 122/162 (75.31%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVI---------SRKLPLADDVDLEAIA 460
            GCGKT +  A A  C L FISVKGPE+LNK+IGASEQ +R++F +A +  PC+LFFDEFDSIAPKRGHD+TGVTDRVVNQ LT++DG E L GV++ AATSRPDL+D+ALLRPGRLD+ + C+ P+  ERLDIL+ I          +K  L  + DL+ IA
Sbjct:  741 GCGKTLLASAVAQQCGLNFISVKGPEILNKFIGASEQNIRELFERAQSVKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGLDGVYILAATSRPDLIDSALLRPGRLDKSVICNIPTESERLDILQAIVNSKDKDTGQKKFALEKNADLKLIA 902          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.943e-50
Identity = 88/153 (57.52%), Postives = 123/153 (80.39%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GCGKT++  A ++   ++FIS+KGPELL+KYIG SEQ VRD+FS+A  A PC+LFFDEFDS+AP+RG D+TGVTDRVVNQ LT++DG E L GV++ AAT+RPD++D ALLRPGRLD+L+FCD P+  ERL++L+ ++ +  + +   L+ ++
Sbjct:  650 GCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLS 802          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.758e-47
Identity = 87/152 (57.24%), Postives = 118/152 (77.63%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDL 448
            GCGKT +  A A+ C   FISVKGPELLNKY+G SE+AVR +F +A A++PC++FFDEFD++APKRG  + G    T+RVVNQ LTE+DG+E  + VF+ AAT+RPD++DAA+ RPGRLD++++   PSP ER +ILK ++ K+P+  DVDL
Sbjct:  610 GCGKTLLAKAIASECQANFISVKGPELLNKYVGESERAVRQVFQRAAASSPCVIFFDEFDALAPKRGGGDGGGNQATERVVNQLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLDKMVYVPLPSPEERCEILKTLTHKIPIHQDVDL 761          

HSP 2 Score: 90.8929 bits (224), Expect = 2.925e-18
Identity = 62/203 (30.54%), Postives = 87/203 (42.86%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG--------------------------------------------------VFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            GCGKT +  A A    +   ++   E+ +   G SE  VR +FS A A APC++F DE D+IAPKR   +  +  R+V+Q LT +D +  L+                                                   V V  AT+RP+ LD AL   GR D+ +    P    R  ILKVI+ K+ L ++ D E IA
Sbjct:  260 GCGKTLLAKAIAGELKVPLFAISATEITSGVSGESEARVRTLFSNAIAQAPCIIFIDEIDAIAPKRESASKDMERRIVSQLLTCMDSLNYLSSNNSTNEPNEQTEQQQQQQQDIIEVDSQATTTTTASNNNNKQQKNDFKKGHVIVIGATNRPESLDTALRIGGRFDKEICLGIPDQTARCKILKVITSKMRLENNFDYEEIA 462          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: NVL_HUMAN (Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.540e-43
Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISR---KLPLADDVDLEAIA 460
            GCGKT +  A A    L FISVKGPELLN Y+G SE+AVR +F +A  +APC++FFDE D++ P+R    TG + RVVNQ LTE+DG+E    VF+ AAT+RPD++D A+LRPGRLD+ LF   P P +RL ILK I++   K PL  DV+LEAIA
Sbjct:  625 GCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIA 780          

HSP 2 Score: 111.694 bits (278), Expect = 1.601e-24
Identity = 63/158 (39.87%), Postives = 87/158 (55.06%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT---ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            GCGKT +  A A    L  + V  PE+++   G SEQ +R++F +A + APC++F DE D+I PKR   +  +  R+V Q LT   +L+ V     V V  AT+RPD LD AL R GR DR +    P    R  IL+ + RKL L    D   +AH+
Sbjct:  308 GCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHL 465          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: NVL_MOUSE (Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.627e-43
Identity = 86/157 (54.78%), Postives = 113/157 (71.97%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISR---KLPLADDVDLEAIAH 463
            GCGKT +  A A    L FISVKGPELLN Y+G SE+AVR +F +A  +APC++FFDE D++ P+R    TG + RVVNQ LTE+DG+E    VF+ AAT+RPD++D A+LRPGRLD+ LF   P P +R+ ILK I++   K PL +DV+LE IA+
Sbjct:  624 GCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIAN 780          

HSP 2 Score: 109.768 bits (273), Expect = 6.085e-24
Identity = 62/158 (39.24%), Postives = 88/158 (55.70%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT---ELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIAHM 466
            GCGKT +  A A    L  + V  PE+++   G SEQ +R++F +A + APC++F DE D+I PKR   +  +  R+V Q LT   +L+ V     V V  AT+RPD LD AL R GR DR +    P    R  IL+ + RKL L +  +   +AH+
Sbjct:  307 GCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVCLGIPDEAARERILQTLCRKLRLPETFNFCHLAHL 464          
BLAST of CX289487 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.853e-43
Identity = 86/154 (55.84%), Postives = 114/154 (74.03%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A      FISVKGPE+ +K++G SE+A+R+IF KA  +APC++FFDE D+IAPKRG D ++ VTD+VVNQ LTELDG+E    V V AAT+RPD++D ALLRPGRLDR++    P  + RLDI K+ +R + LA+DV+LE +A
Sbjct:  496 GTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELA 649          

HSP 2 Score: 126.716 bits (317), Expect = 4.810e-29
Identity = 66/153 (43.14%), Postives = 94/153 (61.44%), Query Frame = 2
Query:    2 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSPRERLDILKVISRKLPLADDVDLEAIA 460
            G GKT +  A A      F  + GPE+++KY+G +E+ +R IF +A   AP ++F DE D+IAPKR      V  R+V Q LT +DG++    V V  AT+RP+ LD AL RPGR DR +    P    R +IL++ +R +PLA+DVDL+ +A
Sbjct:  223 GTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLA 375          
The following BLAST results are available for this feature:
BLAST of CX289487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
PEX1_DICDI3.197e-5768.63Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]
PEX1_HUMAN1.343e-5569.93Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
PEX1_MOUSE5.104e-5567.97Peroxisome biogenesis factor 1 OS=Mus musculus GN=... [more]
PEX1_PICPA1.137e-5464.71Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]
PEX1_YEAST1.177e-5160.49Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
PEX1_SCHPO4.943e-5057.52Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
NVL_DICDI1.758e-4757.24Putative ribosome biogenesis ATPase nvl OS=Dictyos... [more]
NVL_HUMAN1.540e-4356.41Nuclear valosin-containing protein-like OS=Homo sa... [more]
NVL_MOUSE2.627e-4354.78Nuclear valosin-containing protein-like OS=Mus mus... [more]
Y1156_METJA5.853e-4355.84Cell division cycle protein 48 homolog MJ1156 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC02013G12SK IF1 Citrus clementina cDNA clone C02013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289487 ID=CX289487; Name=CX289487; organism=Citrus clementina; type=EST; length=468bp
TGGTTGTGGCAAGACTCACATAGTTGGTGCTGCTGCTGCTGCTTGTTCAT
TACGATTTATATCAGTGAAAGGGCCTGAGCTGTTGAACAAATACATTGGT
GCTTCTGAGCAAGCTGTTCGGGATATATTCTCAAAAGCAACTGCTGCAGC
ACCATGCCTCCTCTTTTTTGATGAATTTGATTCTATTGCCCCAAAGCGAG
GGCATGATAATACTGGAGTGACTGATCGTGTTGTTAATCAGTTTCTGACT
GAGTTAGATGGCGTTGAAGTGTTGACTGGTGTATTTGTGTTTGCTGCAAC
AAGTAGACCGGATCTACTTGATGCTGCCCTGTTAAGACCTGGTAGGCTGG
ATCGCCTTCTCTTCTGTGATTTTCCATCTCCACGTGAGAGGTTGGATATT
CTTAAAGTTATTTCTAGAAAGTTACCATTGGCCGATGATGTTGATTTAGA
AGCCATAGCTCATATGAC
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