CX290136

Overview
NameCX290136
Unique NameCX290136
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.619e-61
Identity = 118/154 (76.62%), Postives = 129/154 (83.77%), Query Frame = 3
Query:   42 VAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            +A EQLCYIPCNFCNI+LAV+VPCSSL DIVTVRCGHC+NLWSVNMAAA QSLS  +    QA +YA PE     GSSS+ + KI + R  T   TE+R+VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF
Sbjct:    6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF---QATNYAVPE----YGSSSRSHTKIPS-RISTRTITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 151          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.909e-44
Identity = 96/171 (56.14%), Postives = 115/171 (67.25%), Query Frame = 3
Query:   42 VAP-EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL-SWQDVHHHQAPSYASPECRID-----------LGSSSKCNNKISAMR----TPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            +AP EQ+CY+ CNFCN +LAVSVP +S+L+IVTVRCGHC+NL SVN+     S  + QD HHH         C  D             SSSK     +A      +  N+  E+ +  RPPEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+IHF
Sbjct:    5 IAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHF 175          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.216e-43
Identity = 92/161 (57.14%), Postives = 117/161 (72.67%), Query Frame = 3
Query:   27 SCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQD--VHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            S  I  APE +CY+ CNFCN + AVSVP +S+L+IVTVRCGHC++L SVN+    Q+L  +D    + +  + +  E   + GSSS+   ++  M +  +  TE  +  RPPEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAHFP+IHF
Sbjct:    2 SAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYG-RVPMMFSKND--TEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHF 159          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.085e-42
Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 3
Query:   36 IDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSY---ASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            +D + E++CY+ C+FC  +LAVSVP +SL  +VTVRCGHC+NL S+N+  +    S   +H    P      S   R D  SSS+  N +S      ++        RPPEKRQRVPSAYN+FIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHF
Sbjct:    3 VDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSEN---IDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHF 158          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.010e-41
Identity = 96/188 (51.06%), Postives = 112/188 (59.57%), Query Frame = 3
Query:   51 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM--------AAAFQSLSW--------------QDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNKATEERV--------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            EQLCY+ CNFC+ +LAV VPCSSL   VTVRCGHC+NL SVN+        A+    L +               +V   QAP+      ASP       S+S C N   A  M +  NKAT+            NR  EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNWAHFPHIHF
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHF 216          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSI (Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.010e-41
Identity = 96/188 (51.06%), Postives = 112/188 (59.57%), Query Frame = 3
Query:   51 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM--------AAAFQSLSW--------------QDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNKATEERV--------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            EQLCY+ CNFC+ +LAV VPCSSL   VTVRCGHC+NL SVN+        A+    L +               +V   QAP+      ASP       S+S C N   A  M +  NKAT+            NR  EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNWAHFPHIHF
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHF 216          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 93/188 (49.47%), Postives = 105/188 (55.85%), Query Frame = 3
Query:   51 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--HQAPSYASPECRIDL--------------------------GSSSKCNNKISAMRTPTNKATEERV---------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            EQLCY+ CN C+ +LAV VPCSSL   VTVRCGHC+NL SVN+             +  H  PS  SP     L                           SSS C +   AM+ P  K  ++            NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHF
Sbjct:   23 EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 210          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 93/188 (49.47%), Postives = 105/188 (55.85%), Query Frame = 3
Query:   51 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--HQAPSYASPECRIDL--------------------------GSSSKCNNKISAMRTPTNKATEERV---------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            EQLCY+ CN C+ +LAV VPCSSL   VTVRCGHC+NL SVN+             +  H  PS  SP     L                           SSS C +   AM+ P  K  ++            NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHF
Sbjct:   23 EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 210          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB1_ARATH (Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.826e-38
Identity = 87/165 (52.73%), Postives = 104/165 (63.03%), Query Frame = 3
Query:   51 EQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRT-PT-------------NKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            + LCY+ CNFC  +LAV+VP +SL   VTVRCG C+NL SVNM +     S Q        SY +P+  ++    +  N  +  M   PT             ++  +   VNRPPEKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHF
Sbjct:   23 DHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 187          
BLAST of CX290136 vs. ExPASy Swiss-Prot
Match: YAB3_ORYSJ (Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.069e-38
Identity = 99/218 (45.41%), Postives = 120/218 (55.05%), Query Frame = 3
Query:   21 MSSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCSNLWSVNM--------------------------AAAF-QSLSWQDV---HHHQAP---SYASPECRIDL---------GSSSKCNNKIS-----AMRTPTNKA----------TEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 503
            +++   D   EQLCY+ C++C+ VL VSVP SSL + VTVRCGHCS+L +VNM                          AA F  SL+       HHH      S A+   ++ L          S++ C N  S     A   PT++           T   V+NRPPEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHF
Sbjct:   48 VAAAAADSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHSLNLAPANPPHHHSLLDEISTANSPTQLLLEQHGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 265          
The following BLAST results are available for this feature:
BLAST of CX290136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YAB5_ARATH2.619e-6176.62Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YAB6_ORYSJ2.909e-4456.14Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB2_ORYSJ3.216e-4357.14Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB2_ARATH2.085e-4254.72Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]
YAB5_ORYSJ3.010e-4151.06Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ORYSI3.010e-4151.06Protein YABBY 5 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB4_ORYSJ2.548e-4049.47Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI2.548e-4049.47Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB1_ARATH1.826e-3852.73Axial regulator YABBY 1 OS=Arabidopsis thaliana GN... [more]
YAB3_ORYSJ4.069e-3845.41Protein YABBY 3 OS=Oryza sativa subsp. japonica GN... [more]

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Properties
Property NameValue
Genbank descriptionC02020H03SK IF1 Citrus clementina cDNA clone C02020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290136 ID=CX290136; Name=CX290136; organism=Citrus clementina; type=EST; length=504bp
AGGAATTCGGCACGAGGGACATGTCGAGCTGCGGCATCGATGTTGCGCCT
GAGCAACTCTGCTACATCCCCTGCAACTTTTGCAACATAGTTCTCGCGGT
GAGTGTTCCTTGCAGTAGCTTGCTTGACATCGTGACTGTCCGATGCGGGC
ACTGCTCCAATCTATGGTCCGTGAATATGGCAGCCGCTTTTCAGTCACTG
TCATGGCAAGATGTTCATCATCATCAGGCTCCAAGTTACGCGTCACCCGA
GTGCAGAATTGATTTGGGTTCCTCGTCCAAATGCAACAACAAGATTTCAG
CAATGCGAACACCCACTAACAAGGCCACTGAGGAGAGGGTTGTGAATCGT
CCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCATACAACCAGTTTATAAA
AGAGGAGATTCAGAGGATCAAGGCTAATAATCCAGATATCAGCCACAGGG
AAGCATTCAGTACTGCCGCAAAGAATTGGGCACACTTCCCTCACATCCAT
TTTG
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