CX290470
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290470 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15 Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 2 Query: 89 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 292 H PY+EM++EAIT+LKERTGSS +AIAKF+E+K KA LP NF A GKL KVKNS+KL Sbjct: 50 HLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKL 117
BLAST of CX290470 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15 Identity = 48/97 (49.48%), Postives = 54/97 (55.67%), Query Frame = 2 Query: 2 PAMAPVAAKTPKEGXXXXXXXXXXXXXRAHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 292 PA AP AAK K AHP Y+EM++EAI ALKER+GSS AI KFIE+K KA LP NF A GKL KVK S+KL Sbjct: 30 PAKAPKAAKAKKSTPGPKKPRVTP----AHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKL 122
BLAST of CX290470 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.320e-15 Identity = 44/68 (64.71%), Postives = 48/68 (70.59%), Query Frame = 2 Query: 89 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 292 HPPY EMI +AI LKERTGSSQ AI KFIEEKQK SLP+NF A+ KLVKVKNS+KL Sbjct: 56 HPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122
BLAST of CX290470 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14 Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 2 Query: 86 AHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 292 +HP Y EMI +AI +LKE+ GSSQ+AIAKFIEEKQK LP NF A+GKL+KVK SFKL Sbjct: 61 SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKL 128
BLAST of CX290470 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14 Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 2 Query: 17 VAAKTPKEGXXXXXXXXXXXXXRAHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 292 +AAK PK +HP + EMI++AI+ LKERTGSSQ+AI KF+E+K K LP+NF A+GKLVKVKNSFKL Sbjct: 38 IAAKKPKS-----------KGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117
BLAST of CX290470 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13 Identity = 41/69 (59.42%), Postives = 46/69 (66.67%), Query Frame = 2 Query: 86 AHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 292 +HP Y EMI +AI LKERTGSSQ+AI KFIEEK+K LP F A+GKLVKVK SFKL Sbjct: 61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128
BLAST of CX290470 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12 Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 2 Query: 86 AHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 292 +HP Y EMI +AI LKERTGSSQ+AI KFIEEK K SLP F A+ KLVKVK SFK+ Sbjct: 61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128
BLAST of CX290470 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11 Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 2 Query: 89 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 292 HPPY +MI EA+ AL E+ GSS +A+AK++E+K K LP NF A GKL+K+K S+KL Sbjct: 49 HPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKL 116 The following BLAST results are available for this feature:
BLAST of CX290470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290470 ID=CX290470; Name=CX290470; organism=Citrus clementina; type=EST; length=688bpback to top |