CX290814
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2) HSP 1 Score: 451.825 bits (1161), Expect = 1.665e-126 Identity = 224/236 (94.92%), Postives = 231/236 (97.88%), Query Frame = 2 Query: 5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712 RELAYQIC+EF RFSTYLPD KV+VFYGGVNIKIHKDLLKNECP IVVGTPGR+LALAR+KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE+EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERV + Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI 359
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2) HSP 1 Score: 449.514 bits (1155), Expect = 8.262e-126 Identity = 223/236 (94.49%), Postives = 230/236 (97.46%), Query Frame = 2 Query: 5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712 RELAYQIC+EF RFSTYLPD KV+VFYGGVNIKIHKDLLKNECP IVVGTPGR+LALAR+KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE+EK RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERV + Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI 359
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2) HSP 1 Score: 440.269 bits (1131), Expect = 5.012e-123 Identity = 218/236 (92.37%), Postives = 228/236 (96.61%), Query Frame = 2 Query: 5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712 RELAYQICHEFERFS YLP++KVAVFYGGV+IK HKDLLKN+CP IVVGTPGRILALAR+KDLSLKNVRHFILDECDKML+SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEG+KRILVATDLVGRGIDIERV + Sbjct: 129 RELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI 364
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1) HSP 1 Score: 440.269 bits (1131), Expect = 5.012e-123 Identity = 218/236 (92.37%), Postives = 228/236 (96.61%), Query Frame = 2 Query: 5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 712 RELAYQICHEFERFS YLP++KVAVFYGGV+IK HKDLLKN+CP IVVGTPGRILALAR+KDLSLKNVRHFILDECDKML+SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEG+KRILVATDLVGRGIDIERV + Sbjct: 129 RELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI 364
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3) HSP 1 Score: 354.369 bits (908), Expect = 3.617e-97 Identity = 173/237 (73.00%), Postives = 207/237 (87.34%), Query Frame = 2 Query: 5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715 RELA+QI E+ERFS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERV ++ Sbjct: 123 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 359
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: UAP56_PONAB (Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=BAT1 PE=2 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 3.617e-97 Identity = 173/237 (73.00%), Postives = 207/237 (87.34%), Query Frame = 2 Query: 5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715 RELA+QI E+ERFS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERV ++ Sbjct: 123 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 359
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: UAP56_PIG (Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT1 PE=3 SV=2) HSP 1 Score: 354.369 bits (908), Expect = 3.617e-97 Identity = 173/237 (73.00%), Postives = 207/237 (87.34%), Query Frame = 2 Query: 5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715 RELA+QI E+ERFS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERV ++ Sbjct: 123 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 359
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: UAP56_PANTR (Spliceosome RNA helicase BAT1 OS=Pan troglodytes GN=BAT1 PE=3 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 3.617e-97 Identity = 173/237 (73.00%), Postives = 207/237 (87.34%), Query Frame = 2 Query: 5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715 RELA+QI E+ERFS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERV ++ Sbjct: 123 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 359
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: UAP56_MOUSE (Spliceosome RNA helicase Bat1 OS=Mus musculus GN=Bat1 PE=1 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 3.617e-97 Identity = 173/237 (73.00%), Postives = 207/237 (87.34%), Query Frame = 2 Query: 5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715 RELA+QI E+ERFS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERV ++ Sbjct: 123 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 359
BLAST of CX290814 vs. ExPASy Swiss-Prot
Match: UAP56_MACMU (Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN=BAT1 PE=3 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 3.617e-97 Identity = 173/237 (73.00%), Postives = 207/237 (87.34%), Query Frame = 2 Query: 5 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 715 RELA+QI E+ERFS Y+P++KVAVF+GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERV ++ Sbjct: 123 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 359 The following BLAST results are available for this feature:
BLAST of CX290814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290814 ID=CX290814; Name=CX290814; organism=Citrus clementina; type=EST; length=721bpback to top |